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alphafold

Open source code for AlphaFold.

anchorwave

sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation

asgard

scRNA-drug-main

awesome-public-datasets

A topic-centric list of HQ open datasets.

b10kgenome_annotation

Scripts used in the annotation of B10K genomes

basset

Convolutional neural network analysis for predicting DNA sequence activity.

bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

cactus

Official home of genome aligner based upon notion of Cactus graphs

cactus_alignments_tools

The toolbox used to deal with cactus whole genome alignments

cmb-plains

cne-dddmaps

Mutability adjusted proportion of singletons calculation using synonymous SNPs from the DDD unaffected parents.

cnefinder

CNEFinder: Finding Conserved Non-coding Elements in Genomes

cner

Conserved Noncoding Elements (CNEs) Identification and Visualisation

cnes-dddnoncoding2017

Code for paper published in March, 2017 analysing the role of de novo mutations in severe developmental disorders (part of the deciphering developmental disorders project).

course_rna-seq2019

crosstalker

R package to do the Ligand Receptor Analysis Visualization

dbcns

Database of conserved non-coding sequence

dcns

conserved non-coding sequence

deep_learning_and_the_game_of_go

Code and other material for the book "Deep Learning and the Game of Go"

deep_learning_with_go

Based off 'Deep Learning and the Game of Go - Max Pumperla & Kevin Ferguson'

deepasmrna

dna-alignment-entropy

Calculate Shannon entropy for every position of an aligned fasta file

elabftw

:notebook: eLabFTW is the most popular open source electronic lab notebook for research labs.

etc

/etc/ on my Thinkpad t430

galaxy-rna-workbench

Galaxy RNA workbench

genome-megahit

Ultra-fast and memory-efficient (meta-)genome assembler

genomeassemblyascesstool--quast

Genome assembly evaluation tool

he2rna_code

Train a model to predict gene expression from histology slides.

hist2rna

Code coming soon

hover_net

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.