Comments (2)
Just set the pdb id as "", you'll get a prompt to upload your own PDB file :D
So instead of:
model.prep_inputs(pdb_filename=get_pdb("1TEN"), chain="A")
do
model.prep_inputs(pdb_filename=get_pdb(""), chain="A")
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@phiweger This is a fantastic question, I came here to ask it myself. Hopefully if this thread gets enough attention the function will be formally added. For the time being, if I figure out a workaround I will be sure to post it here.
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Related Issues (20)
- MPNN designed sequence not separated correctly with multiple targets and multiple binders HOT 2
- Patch fix_partial_contigs when residue numbering in PDB has a gap HOT 2
- Allow to select the Complex_beta_ckpt model in RFdiffusion colab?
- Translate colab for RFdiffusion to a jupyter notebook?
- How to get PAE files when running RFdiffusion
- Is it possible to bypass the design step of AfDesign?
- Do the soft iterations in pssm_semigreedy obey the bias matrix
- fix_pos in af/fixbb HOT 2
- Partially folding a structure using AF
- How to continue a design run?
- Contigs messed up with partial diffusion and manual symmetry
- Can af_cyc_design generate cyclic pepitide with D-Amino acid HOT 1
- Is the "i_pae" score in the designability_test.py the same as pAE_interaction?
- Locally Run ColabDesign
- XlaRuntimeError: FAILED_PRECONDITION: DNN library initialization failed. HOT 1
- converting other MPNN checkpoints for support in ColabDesign and JAX HOT 8
- mk_af_model: refolding a sequence of a experimental structure using said structure as a template performs miserably HOT 2
- af_model.predict failing HOT 2
- Is it preferable for the "con" metric to have a smaller value during the optimization process?
- binders designed don't binds at the hotspots of the target chain.
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