Comments (5)
I found it is because I choose the wrong obs. I fixed it.
But after I corrected it, I got new error. AttributeError: 'Namespace' object has no attribute 'device'
.
Thanks for your patience.
Yale
from mars.
Hi, how did you solve this issue? I am currently experiencing it now.
from mars.
@giandrickdabian I gave it up and used singleR package to annotate the cell types.
from mars.
@giandrickdabian You can check whether the labels you are giving to the MARS are correct. If you have string labels, you need to convert them to numeric. You can check how this is done for Tabula Muris data here.
from mars.
@giandrickdabian You can check whether the labels you are giving to the MARS are correct. If you have string labels, you need to convert them to numeric. You can check how this is done for Tabula Muris data here.
Hey thanks, yes in my notebook you see that i did change them to numeric. I read somewhere something about setting reprocess input to true but idk where exactly to do that
from mars.
Related Issues (16)
- MARS_labels is totally different from ClusterID
- unavailable to the example dataset HOT 1
- Mapping of MARS predicted IDs to groundtruth/reference dataset HOT 2
- requirements.txt HOT 1
- MARS code problems HOT 2
- Provide tutorial for mars.name_cell_types HOT 3
- How to determine n_clusters for a unseen data HOT 2
- mars.train reports inaccurate performance scores? HOT 3
- How to use memory across multiple GPUs with MARS? HOT 2
- What version of python? HOT 1
- Seurat / Reticulate example HOT 1
- add MARS to SingleCellOpenProblems
- how to load args_parser and model? HOT 2
- NameError: name 'anndata' is not defined HOT 2
- How to visualize the " MARS_embeddings" and how to define the 'cell_type_name_map'?
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from mars.