Comments (4)
relf
commented on June 29, 2024
1
@lucas-brunel , looks like your gcc installation is broken
gcc: fatal error: cannot execute ‘cc1plus’: execvp: No such file or directory
Maybe reinstall gcc as suggested here
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lucas-brunel
commented on June 29, 2024
1
Thanks @relf for your help, you were right about my gcc installation.
I reinstalled gcc with the following:
sudo dnf reinstall gcc
and tried installing smt again and got a different error:
...
copying smt/applications/mfk.py -> build/lib.linux-x86_64-cpython-311/smt/applications
copying smt/applications/ego.py -> build/lib.linux-x86_64-cpython-311/smt/applications
copying smt/applications/application.py -> build/lib.linux-x86_64-cpython-311/smt/applications
copying smt/applications/__init__.py -> build/lib.linux-x86_64-cpython-311/smt/applications
running build_ext
building 'smt.surrogate_models.rbfclib' extension
creating build/temp.linux-x86_64-cpython-311
creating build/temp.linux-x86_64-cpython-311/smt
creating build/temp.linux-x86_64-cpython-311/smt/src
creating build/temp.linux-x86_64-cpython-311/smt/src/rbf
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ismt/src/rbf -I/tmp/pip-build-env-ion07yua/overlay/lib64/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c smt/src/rbf/rbf.cpp -o build/temp.linux-x86_64-cpython-311/smt/src/rbf/rbf.o -std=c++11
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ismt/src/rbf -I/tmp/pip-build-env-ion07yua/overlay/lib64/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c smt/src/rbf/rbfclib.cpp -o build/temp.linux-x86_64-cpython-311/smt/src/rbf/rbfclib.o -std=c++11
smt/src/rbf/rbfclib.cpp:35:10: fatal error: Python.h: No such file or directory
35 | #include "Python.h"
| ^~~~~~~~~~
compilation terminated.
error: command '/usr/bin/gcc' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for smt
Failed to build smt
ERROR: Could not build wheels for smt, which is required to install pyproject.toml-based projects
I solved this problem by installing python3-devel as explained here (there are instructions for other linux distributions).
sudo dnf install python3-devel
Thanks again for your help!
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relf
commented on June 29, 2024
Hi. Just to be sure, what command did you run to install smt? It seems you've had problems during the compilation of cpp extensions. Maybe check the installation of MSVC. Otherwise, if you use conda, windows binaries are available.
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lucas-brunel
commented on June 29, 2024
Hi!
I've encountered a similar issue on Fedora 37 (linux). The installation fails with the same error on both python 3.9.16 and 3.11.2 and both pip 22.2.2 and 23.0.1.
The installation worked on my windows machine with python 3.9.16.
I got the following error:
(env) [lucasb@fedora-lucas review]$ pip install smt
Collecting smt
Using cached smt-1.3.0.tar.gz (256 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting scikit-learn
Using cached scikit_learn-1.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.6 MB)
Collecting pyDOE2
Using cached pyDOE2-1.3.0-py3-none-any.whl
Collecting scipy
Using cached scipy-1.10.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (34.5 MB)
Collecting numpy
Using cached numpy-1.24.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
Collecting joblib>=1.1.1
Using cached joblib-1.2.0-py3-none-any.whl (297 kB)
Collecting threadpoolctl>=2.0.0
Using cached threadpoolctl-3.1.0-py3-none-any.whl (14 kB)
Building wheels for collected packages: smt
Building wheel for smt (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building wheel for smt (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [96 lines of output]
/tmp/pip-build-env-hploap75/overlay/lib/python3.9/site-packages/setuptools/dist.py:788: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/tmp/pip-build-env-hploap75/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:516: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead.
warnings.warn(msg, warning_class)
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-39
creating build/lib.linux-x86_64-cpython-39/smt
copying smt/__init__.py -> build/lib.linux-x86_64-cpython-39/smt
creating build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/surrogate_model.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/rmts.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/rmtc.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/rmtb.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/rbf.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/qp.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/mgp.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/ls.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/krg_based.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/krg.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/kplsk.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/kpls.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/idw.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/genn.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/gekpls.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
copying smt/surrogate_models/__init__.py -> build/lib.linux-x86_64-cpython-39/smt/surrogate_models
creating build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/wing_weight.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/welded_beam.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/water_flow_lfidelity.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/water_flow.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/torsion_vibration.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/tensor_product.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/sphere.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/rosenbrock.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/robot_arm.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/reduced_problem.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/problem.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/ndim_step_function.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/ndim_rosenbrock.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/ndim_robot_arm.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/ndim_cantilever_beam.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/lp_norm.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/cantilever_beam.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/branin.py -> build/lib.linux-x86_64-cpython-39/smt/problems
copying smt/problems/__init__.py -> build/lib.linux-x86_64-cpython-39/smt/problems
creating build/lib.linux-x86_64-cpython-39/smt/sampling_methods
copying smt/sampling_methods/sampling_method.py -> build/lib.linux-x86_64-cpython-39/smt/sampling_methods
copying smt/sampling_methods/random.py -> build/lib.linux-x86_64-cpython-39/smt/sampling_methods
copying smt/sampling_methods/lhs.py -> build/lib.linux-x86_64-cpython-39/smt/sampling_methods
copying smt/sampling_methods/full_factorial.py -> build/lib.linux-x86_64-cpython-39/smt/sampling_methods
copying smt/sampling_methods/__init__.py -> build/lib.linux-x86_64-cpython-39/smt/sampling_methods
creating build/lib.linux-x86_64-cpython-39/smt/utils
copying smt/utils/sm_test_case.py -> build/lib.linux-x86_64-cpython-39/smt/utils
copying smt/utils/silence.py -> build/lib.linux-x86_64-cpython-39/smt/utils
copying smt/utils/printer.py -> build/lib.linux-x86_64-cpython-39/smt/utils
copying smt/utils/options_dictionary.py -> build/lib.linux-x86_64-cpython-39/smt/utils
copying smt/utils/misc.py -> build/lib.linux-x86_64-cpython-39/smt/utils
copying smt/utils/linear_solvers.py -> build/lib.linux-x86_64-cpython-39/smt/utils
copying smt/utils/line_search.py -> build/lib.linux-x86_64-cpython-39/smt/utils
copying smt/utils/kriging_utils.py -> build/lib.linux-x86_64-cpython-39/smt/utils
copying smt/utils/checks.py -> build/lib.linux-x86_64-cpython-39/smt/utils
copying smt/utils/caching.py -> build/lib.linux-x86_64-cpython-39/smt/utils
copying smt/utils/__init__.py -> build/lib.linux-x86_64-cpython-39/smt/utils
creating build/lib.linux-x86_64-cpython-39/smt/utils/neural_net
copying smt/utils/neural_net/optimizer.py -> build/lib.linux-x86_64-cpython-39/smt/utils/neural_net
copying smt/utils/neural_net/model.py -> build/lib.linux-x86_64-cpython-39/smt/utils/neural_net
copying smt/utils/neural_net/metrics.py -> build/lib.linux-x86_64-cpython-39/smt/utils/neural_net
copying smt/utils/neural_net/loss.py -> build/lib.linux-x86_64-cpython-39/smt/utils/neural_net
copying smt/utils/neural_net/fwd_prop.py -> build/lib.linux-x86_64-cpython-39/smt/utils/neural_net
copying smt/utils/neural_net/data.py -> build/lib.linux-x86_64-cpython-39/smt/utils/neural_net
copying smt/utils/neural_net/bwd_prop.py -> build/lib.linux-x86_64-cpython-39/smt/utils/neural_net
copying smt/utils/neural_net/activation.py -> build/lib.linux-x86_64-cpython-39/smt/utils/neural_net
copying smt/utils/neural_net/__init__.py -> build/lib.linux-x86_64-cpython-39/smt/utils/neural_net
creating build/lib.linux-x86_64-cpython-39/smt/applications
copying smt/applications/vfm.py -> build/lib.linux-x86_64-cpython-39/smt/applications
copying smt/applications/moe.py -> build/lib.linux-x86_64-cpython-39/smt/applications
copying smt/applications/mixed_integer.py -> build/lib.linux-x86_64-cpython-39/smt/applications
copying smt/applications/mfkplsk.py -> build/lib.linux-x86_64-cpython-39/smt/applications
copying smt/applications/mfkpls.py -> build/lib.linux-x86_64-cpython-39/smt/applications
copying smt/applications/mfk.py -> build/lib.linux-x86_64-cpython-39/smt/applications
copying smt/applications/ego.py -> build/lib.linux-x86_64-cpython-39/smt/applications
copying smt/applications/application.py -> build/lib.linux-x86_64-cpython-39/smt/applications
copying smt/applications/__init__.py -> build/lib.linux-x86_64-cpython-39/smt/applications
running build_ext
building 'smt.surrogate_models.rbfclib' extension
creating build/temp.linux-x86_64-cpython-39
creating build/temp.linux-x86_64-cpython-39/smt
creating build/temp.linux-x86_64-cpython-39/smt/src
creating build/temp.linux-x86_64-cpython-39/smt/src/rbf
gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ismt/src/rbf -I/tmp/pip-build-env-hploap75/overlay/lib64/python3.9/site-packages/numpy/core/include -I/home/lucasb/Documents/PHD/these-lucas-brunel/Code/review/env/include -I/usr/include/python3.9 -c smt/src/rbf/rbf.cpp -o build/temp.linux-x86_64-cpython-39/smt/src/rbf/rbf.o -std=c++11
gcc: fatal error: cannot execute ‘cc1plus’: execvp: No such file or directory
compilation terminated.
error: command '/usr/bin/gcc' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for smt
Failed to build smt
ERROR: Could not build wheels for smt, which is required to install pyproject.toml-based projects
Let me know if I can give you any complementary info.
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Related Issues (20)
- Fixing seed of surrogates HOT 1
- Does SMT support parallel computing or GPU computing? HOT 1
- SMT version 1.3 or 2.0? HOT 2
- Can't Run Example EGO Code HOT 2
- Kriging surrogate model in case of multiple outputs HOT 5
- Sampling Method sometimes gets stuck HOT 2
- pyDOE2 non-functional with python 3.12, appears to be unsupported. HOT 5
- Question on drawing drawing sample from MFK GP posterior. HOT 3
- Any interest in putting this on conda-forge? HOT 3
- Zero predicted variance while prediction differs from ground truth HOT 1
- Adaptive sampling methods for Kriging models and its variants including multi-fidelity Kriging HOT 1
- AttributeError: 'DesignSpace' object has no attribute '_cs' HOT 4
- InactiveHyperparameterSetError encountered when solving the HierarchicalGoldstein problem. HOT 3
- data-driven Multi-Fidelity Kriging HOT 1
- ValueError by passing an int instead of a float HOT 3
- SMT 2.5 is not available on conda-forge HOT 2
- Error from SMT --> ValueError: setting an array element with a sequence. HOT 4
- Question on new syntax to train GENN (JENN) models HOT 6
- Meta: add "Discussions" to GitHub repo? HOT 1
- Saving models without using pickle? HOT 1
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