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Hi there 👋

I am a research software engineer working on open-source repositories for biomedical science. You can find some of my projects below.

I am an advocate for open science and interested in molecular causality. My background is in neuropharmacology, but I have since then branched into software engineering, machine learning, and statistics; my research focus are Knowledge Representation and Large Language Models. If you're interested in what I do, or want to contribute, don't hesitate to reach out to me. My contact information can also be found on my web page.

Sebastian Lobentanzer's Projects

awesome-compbio-chatgpt icon awesome-compbio-chatgpt

An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology

beaker icon beaker

WSGI middleware for sessions and caching

biochatter icon biochatter

Backend library for conversational AI in biomedicine

decoupler-py icon decoupler-py

Python package to infer biological activities from omics data using a collection of methods.

integrative-transcriptomics icon integrative-transcriptomics

Integrative transcriptomics reveals sexually dimorphic control of the cholinergic/neurokine interface in schizophrenia and bipolar disorder

interview icon interview

Resources to crack the next coding interview

obook icon obook

OBO Organized Knowledge: Training materials for becoming an OBO engineer

pypath icon pypath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

pysyft icon pysyft

Data science on data without acquiring a copy

reproduciblity icon reproduciblity

Base Version of the Seminar "Reproducibility in Biomedical Science"

scanpy icon scanpy

Single-cell analysis in Python. Scales to >1M cells.

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