Name: EdwardsLab
Type: User
Company: UWA
Bio: Bioinformatics, genomics and molecular evolution lab of Dr Richard Edwards, University of Western Australia.
Twitter: slimsuite
Location: Perth, Australia
Blog: http://www.slimsuite.unsw.edu.au
EdwardsLab's Projects
BUSCOMP: BUSCO Compiler and Comparison tool
Chromosome-level synteny plotting using orthologous regions
Genome assembly quality control and misassembly repair
Read-depth based copy number estimation
Read-depth based genome size prediction
Diploid genome assembly analysis tools
Edwards Lab Wiki for miscellaneous documentation development
Assembly gap mapping tool
Genome assembly gap long read support and reassembly tool
An R Shiny app for kmer-based genome size prediction
Merqury parsing and comparison for genome assembly purging QC
NUMTFinder: Nuclear mitochondrial fragment (NUMT) search tool
PAFScaff: Pairwise mApping Format reference-based scaffold anchoring and super-scaffolding.
Quenda: Quality Estimation N Depth Analysis
SAAGA: Summarise, Annotate & Assess Genome Annotations
Diploid chromosome phasing from SAMTools Pileup format
SLiMEnrich Shiny App for prediction of domain-motif interactions
Cytoscape plugin for discovery and analysis of Short Linear Motifs
Open source short linear motif discovery and sequence analysis
Shiny implementation of SLiMSuite REST parser
Genome-wide SNP Mapper and Genome Comparison Tool
Synteny-based scaffolding adjustment
Genome assembly taxonomy summary and assessment tool.
Telomere Prediction and Genome Assembly Editing Tool
A snakemake workflow for generating consensus phylogenomic trees from whole genome sequencing data
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