Comments (7)
Kenhasteandersen
commented on July 21, 2024
Hi Gustav,
I have used the first option myself in my own code. It has worked well for me.
I am working on the stomach size-distribution problem. Almost there.
Ken
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gustavdelius
commented on July 21, 2024
@Kenhasteandersen , which plotting functions did you implement option 1 for? Do you want to share your code? Did you do it more elegantly than how it is done for plotYield(), which contains a lot of code duplication?
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Kenhasteandersen
commented on July 21, 2024
I did it in matlab. Not very elegantly, though. However, I like the idea of the functional call that can produce different plots depending on the number of simulation runs that are supplied.
…---------------------------------------------------------------------------------------------------------------
Ken H. Andersen, http://ken.haste.dk<http://ken.haste.dk/>, twitter: @69kno
Professor in theoretical marine ecology, head of section, and deputy director of Centre for Ocean Life http://www.oceanlifecentre.dk<http://www.oceanlifecentre.dk/>
New book: Fish Ecology, Evolution, and Exploitation - A New Theoretical Synthesis https://press.princeton.edu/titles/13516.html
[cid:[email protected]]
On 19 Sep 2019, at 09.31, Gustav W Delius <[email protected]<mailto:[email protected]>> wrote:
@Kenhasteandersen<https://github.com/Kenhasteandersen> , which plotting functions did you implement option 1 for? Do you want to share your code? Did you do it more elegantly than how it is done for plotYield(), which contains a lot of code duplication?
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gustavdelius
commented on July 21, 2024
For now I have moved the displayFrame() function for displaying several frames in the same plot to the mizerExperimental extension package (https://sizespectrum.org/mizerExperimental/), where we can experiment until we find the best way to provide this functionality.
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gustavdelius
commented on July 21, 2024
It may also be worthwhile to say that we now have a section in the user guide that discusses how to make plots comparing results from two different simulations: https://sizespectrum.org/mizer/dev/articles/plotting.html#comparing-simulations
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gustavdelius
commented on July 21, 2024
Another development on this front is that @baldrech is going to give an extra argument to the plotting functions to allow them to return a data frame suitable for use with ggplot2 instead of the plot itself. These could then be used to create plots combining several such data frames.
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gustavdelius
commented on July 21, 2024
@baldrech 's return_data argument to all plotting functions that makes them return a data frame together with the new plotDataFrame() function now makes displayFrames() and the get...Frame() functions obsolete and they have been removed from MizerExperimental.
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Related Issues (20)
- Fix colours for species in NS_params
- Set and document default for exponents in `set...()` functions
- Avoid using $ notation for species parameters with short names
- Better error message when `getParams()` is not called with MizerSim object
- Extra parameters to model discards HOT 2
- Iterative method for finding steady state HOT 1
- Release mizer 2.4.0
- Don't warn repeatedly when l_mat and w_mat are inconsistent HOT 2
- Speed up inner loop
- `matchGrowth()` gives error when there is no `w_inf` column HOT 1
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- Different resource's default values between newTraitParams() and newMultispeciesParams() HOT 1
- `get_h_default()` should provide default even when no growth info is available
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- Adapt `plotYieldObservedVsModel()` and `matchYield()` to work with multiple gears
- Append argument in project function appears non-functional HOT 1
- External encounter rate
- `addSpecies()` should get `info_level` argument
- Make `matchGrowth()` work when `n != p`
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