siddjakes Goto Github PK

allensdk

code for reading and processing Allen Institute for Brain Science data

analysis-tools

Code for reading data saved by the Open Ephys GUI

animateimages

Helper functions to make animations of images with corresponding traces and labels using matplotlib

anipose

🐜🐀🐒🚶 A full system for robust 3D markerless tracking

antcam

Murthy Lab ant-tracking setup control code

arduino-control-panel

Electron App for interacting with my Arduino

autopilot

Distributed behavioral experiments

bonsai-osc-bidirectional-example

Sending data back and forth between bonsai and a pyqt python program via Osc

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

clearmap

ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.

electron-johnny-five-examples

Example electron apps using johnny-five to control hardware

facemap

matlab/python GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)

ffmpeg-python

Python bindings for FFmpeg - with complex filtering support

fishystuff

beta for binder

hovercraft

Make dynamic impressive presentations from text files!

magicgui

build GUIs from python functions, using magic.

mcp9600-python

Python library for the Pimoroni MCP9600 Thermocouple Amplifier Breakout

miniscopy

A package to analyse calcium imaging data recorded with the Miniscope.

mountainlab-js

MountainLab is data processing, sharing and visualization software for scientists. It is built around MountainSort, spike sorting software, but is designed to be more generally applicable.

mousecam

A head-mounted camera system integrates detailed behavioral monitoring with multichannel electrophysiology in freely moving mice

napari

napari: a fast, interactive, multi-dimensional image viewer for python

plugin-gui

Software for processing, recording, and visualizing multichannel electrophysiology data

pyqtgraph

Fast data visualization and GUI tools for scientific / engineering applications

pythondevicewrappers

Python Wrapper for Lab Devices

scopefoundry

ScopeFoundry: A Python platform for controlling custom laboratory experiments and visualizing scientific data

simba

SimBA (Simple Behavioral Analysis), a plug-and-play pipeline and GUI for developing supervised behavioral classifiers

suite2p

cell detection in calcium imaging recordings

t-sne

A Jupyter Notebook to explore the t-SNE visualization algorithm on a toy data set.

test-oeps-gui-plugin-dev-wshop

thunder

scalable analysis of images and time series