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12-days-of-biopython

16s-metatranscriptomic-analysis

NextFlow Pipelines for Qiime2 & Kraken2 metagenomic|metatranscriptomic analyses

abritamr

A pipeline for running AMRfinderPlus and collating results into functional classes

ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

amr

amr_finder

basic_stat

Конспект лекций по курсу "Основы статистики"

bbmap

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

biobakery

bioBakery tools for meta'omic profiling

bioinfo-notebook

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

bioinformatic-python-scripts

Простые биоинформатические скрипты на Python 3. Удобная и гибкая замена Excel/Calc для решения повседневных рутинных задач вычислительной биологии.

build-your-own-x

Master programming by recreating your favorite technologies from scratch.

computer-science

:mortar_board: Path to a free self-taught education in Computer Science!

covigator-ngs-pipeline

A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.

czid-workflows

Portable WDL workflows for CZ ID production pipelines

data-engineering

Getting Started with Data Enngineering

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

fastapi

gentrl

Generative Tensorial Reinforcement Learning (GENTRL) model

insaflu

INSaFLU (“INSide the FLU”) is an influenza-oriented bioinformatics free web-based suite

lucent-notebooks

Colab/Jupyter notebooks based on Lucent.

medusa

Metagenomic pipeline managed by snakemake

metaerg

metaphage

metashot

MetaShot (Metagenomics Shotgun) is a complete pipeline designed for the taxonomic classification of the human microbiota members.

ml-course-hse

Машинное обучение на ФКН ВШЭ

moses

Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

mycob_testgene

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

nf-flu

Influenza genome analysis Nextflow workflow