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Shunhua Han's Projects

gauchian icon gauchian

A variant caller for the GBA gene using WGS data

grocsvs icon grocsvs

Genome-wide reconstruction of complex structural variants

mcclintock icon mcclintock

Meta-pipeline to identify transposable element insertions using next generation sequencing data

parascopy icon parascopy

Paralog-specific copy number estimation for duplicated genes using WGS.

seqkit icon seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

smncopynumbercaller icon smncopynumbercaller

A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS

staged-recipes icon staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

temp icon temp

TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing data

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