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ebprs

EB-PRS is a novel method that leverages information for effect sizes across all the markers to improve the prediction accuracy.

lder

We design a method for heritability estimation, namely LD Eigenvalue Regression (LDER), which extends the LDSC method and provides more accurate estimates of heritability and confounding inflation.

mtwas

Multi-tissue Transcriptome-Wide Association Studies (MTWAS)

mvmr-press

Implementation codes for "A robust penalized-regression-based method for multivariable Mendelian randomization using GWAS summary statistics"

neupred

Implementation codes for "A flexible Bayesian regression approach for accurate polygenic risk prediction"

nprior

onek1k_process

Contains analysis code to generate PEER factors from pseudo-bulk data and perform eQTL association analysis

owas

Openness Weighted Association Studies: Leveraging Personal Genome Information to Prioritize Noncoding Variants

owasjoint

OWAS-joint, a framework for multi-cell-type openness-weighted association studies for trait-associated genomic segments prioritization

participationbias

sodavis

:exclamation: This is a read-only mirror of the CRAN R package repository. sodavis — SODA: Main and Interaction Effects Selection for Logistic Regression, Quadratic Discriminant and General Index Models

xyz

The xyz algorithm for fast interaction search in high-dimensional data.