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16gt

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

agrenseq

bamdst

a lightweight bam file depth statistical tool

bhofmei-jbplugins

All JBrowse plugins created by Brigitte Hofmeister

corrplot

Package corrplot is for visualizing a correlation matrix

d3-flask-blog-post

Blog post on using D3 with flask

demo-python-handle-text-files

django-blast

NCBI-BLAST web service with python backend and HTML5 frontend.

docker-galaxy-genome-annotation

:whale: Galaxy Docker Image with Tools for Genome Annotation

draw_genes

A flexible python program for generating figures from regions of the genome.

filter-blastxml-result

filter BlastXML result

flo

Same species annotation lift over pipeline.

funannotate

Eukaryotic Genome Annotation Pipeline

functional_haplotype_gwas

Selecting closely-linked SNPs based on local epistatic effects for haplotype construction improves power of association mapping

gameofthrones

Colour Palette for R inspired in the TV show Game of Thrones

gean

This toolkit deals with GEnomic sequence and gene structure ANnotation files between inbreeding lines and species.

hexo-theme-raytaylorism

一款Material Design风格的hexo主题

hic-data-analysis-bootcamp

Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

jbplugin-strandedplot

JBrowse plugin that supports positive and negative values at the same coordinate

lncadeep

mamba

A FAST drop-in replacement for the conda command-line utility, in C++,

mikado

Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

mtrans

Multi-source Translation

nlr-annotator

NLR-Annotator upload

peregrine

Peregrine: Fast Genome Assembler Using SHIMMER Index

phylocanvas

[DEPRECATED] Core Phylocanvas Library

plasticity

Rice flowering time plasticity

poplddecay

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

pretzel

Javascript full-stack framework for Big Data visualisation and analysis

psi-sigma

PSI-Sigma