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Shenjia's Projects

edlib icon edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

firstsv icon firstsv

Fast and Accurate Approach of Structural Variations Detection for Short DNA fragments

gatb-core icon gatb-core

Core library of the Genome Analysis Toolbox with de-Bruijn graph

gatk-cpp icon gatk-cpp

Hardware-friendly version of GATK4 HaplotypeCaller.

hl7apy icon hl7apy

Python library to parse, create and handle HL7 v2 messages.

mavis icon mavis

Merging, Annotation, Validation, and Illustration of Structural variants

mutscan icon mutscan

Detect and visualize target mutations by scanning FastQ files directly

sparsepp icon sparsepp

A fast, memory efficient hash map for C++

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