shappiron Goto Github PK

aging_brain_mice

Study an aging chromatin in mouse cortex tissue

alec_stats

This is a temporary repository for writing python functions for ALEC platform.

biodatahack_2019

This repository for demonstration of results taken at #BioDataHack Russian Hackaton.

compagingbot

Test Bot

cur_decomposition

An implementation of "ancient" stochastic CUR matrix decomposition algorithm with example of using.

deepdicty

Deep learning reveals new Dictyostelium chromatin properties

dl2021_hi-c

lp_trigonometry

This small repo is for representation of different metric spaces trigonometry.

mergegram_python

Python implementation of mergegram algorithm from the paper.

persistent_homology_python

Fully python + numba(jit) very basic algorithm to find homology groups and build persistence diagram from data.

prolongui

UI for ProLong blockchain-driven data market.

raif

reprogramming_meta

This is a repository for code of reprogramming meta-analysis research project

reprogramming_models

This repository contains my attempts to reproduce different cell reprogramming mathematical models based from different papers.

single_cell_clocks

tmp

tad-laplacian-identification

Python algorithm for Hi-C TAD identification based on graph Laplacian method (also known as Fiedler vector method)

test_kriukov

Test the hypothesis that molecules with similar structures cause similar gene expression perturbations.

topology_loop_caller

Chromatin loop caller using TDA based on Hi-C data