shannjiang's Projects
Open source code for AlphaFold.
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
Library for Variational Autoencoder benchmarking
:microscope: Path to a free self-taught education in Bioinformatics!
CFA books
Convolutional autoencoder for genotype data
A source code to replicate Sakaue S. et al. Nat Commun. 2020.
categorical variational autoencoder using the Gumbel-Softmax estimator
Fast, sensitive and accurate integration of single-cell data with Harmony
Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.
R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Principle Component Regression
Protein Interface Prediction using Graph Convolutional Networks
Config files for my GitHub profile.
structurePPI: Utilities to work with protein structures
Calculation of TRIple Differentiation
Demultiplexing pooled scRNA-seq data without genotype reference