Siyuan Feng's Projects
ATAC-seq Quality Control
a lightweight bam file depth statistical tool
Bioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.
Population genomic and GEA analyses on Drosophila suzukii
This is a repository that provides an overview, scripts, and helpful hints for doing our evolve and resequence analysis
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
π An online formulae browser for Homebrew
annotation of D. suzukii genomic regions
Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository
practice of genotype-environment association (GEA) analysis
common tricks for git managements
ζζ°η¨ε£ UW-Madisonζ₯η¨ζε
Some scripts for finding CNVs differing in allele frequency between two pool-seq samples (modified)
Heuristic SNP caller for pooled sequencing data
Workflow for processing whole genome pool-seq data and identifying SNPs