serina-robinson Goto Github PK

adenylate_forming_phylo

Phylogenetic analysis of the class I adenlylate forming enzyme superfamily

adenylpred

AdenylPred - substrate prediction tool for adenylate-forming enzymes

adenylpred_analysis

Analysis and raw data scripts for analysis of substrate specificity and function of adenylate-forming enzymes

adenylpred_dev

Development repository for re-training AdenylPred classifier

adenylpred_minimal

Minimal AdenylPred example

adenylpred_scratch

Scratch/testing version of AdenylPred

alpha_beta_hydrolase_final_figs

amplicon_pred

Predict amino acid specificities from shorter amplicon sequences

antismash

antiSMASH

antismash_clustering

Sequence similarity network for antiSMASH database AMP-binding hits

atzd

NCBI accession numbers and HMMs used in bioinformatics analysis for cyanuric acid hydrolase distribution (doi:10.1128/AEM.01964-19)

biuret-hydrolase

Scripts for classification of biuret hydrolase proteins within the cysteine hydrolase superfamily

blastomyces-modeling

Ecological niche modeling for Blastomyces dermatitidis in Minnesota

blt

Beta-lactone tool

broom

Convert statistical analysis objects from R into tidy format

check_a_dom_specificity

Curation of the NRPS A-domain specificity training set

csci-5481

Repo for CSCI 5481: Computational Techniques for Genomics projects

desiccation-prediction

Scripts for predicting desiccation phenotypes from genomic features

example-classification

Rule-based classification of text into distinct groups

example-html

Practice HTML and example tag uses

fkbm-bioinformatics

gastro

R scripts for visualization and exploratory data analysis of diet and microbiome data

githubteacher.github.io

guanylurea_analysis

Sequence analysis of enzymes involved in guanylurea metabolism

jgi_genes_round_2

lipo-ripps

Scripts, raw, and processed data for lipopeptide RiPP genome mining analysis

mibig_14_to_20_schema_refactoring

Refactor MIBiG (version 1.4: August 6th, 2018) JSON schema, both structurally and conceptually. Adopt the latest JSON schema (Draft V7), and update existing data to match the new schema.

mibig_training_set_build_test

Building MIBiG training set for ANL superfamily classifier

microbinsonlab

nrps_predictor