Comments (5)
atrawog
commented on May 24, 2024
Looks like I finally completely screwed up my OTB installation.
[root@hxsc archive]# /usr/bin/otbcli DownloadSWBDTiles -il /mnt/archive/demmaccs_tmp/21397_DEM_OUT/L8_TEST_AUX_REFDE2_189026_2016171_0001.DBL.DIR/L8_TEST_AUX_REFDE2_189026_0001_ALT.TIF -mode list -mode.list.indir /mnt/archive/swbd -mode.list.outlist
*** Error in `/usr/bin/otbApplicationLauncherCommandLine': malloc(): memory corruption: 0x00000000011bd940 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x7dd4d)[0x7fe671206d4d]
/lib64/libc.so.6(__libc_malloc+0x4c)[0x7fe671208fbc]
/lib64/libstdc++.so.6(_Znwm+0x1d)[0x7fe6717bf0cd]
/lib64/libstdc++.so.6(_ZNSs4_Rep9_S_createEmmRKSaIcE+0x59)[0x7fe67181dc79]
/lib64/libstdc++.so.6(_ZNSs4_Rep8_M_cloneERKSaIcEm+0x1b)[0x7fe67181e8bb]
/lib64/libstdc++.so.6(_ZNSs7reserveEm+0x44)[0x7fe67181e964]
/lib64/libstdc++.so.6(_ZNSt15basic_stringbufIcSt11char_traitsIcESaIcEE8overflowEi+0x96)[0x7fe6717fb5f6]
/lib64/libstdc++.so.6(_ZNSt15basic_streambufIcSt11char_traitsIcEE6xsputnEPKcl+0x36)[0x7fe6717ffd66]
/lib64/libstdc++.so.6(_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_+0x14d)[0x7fe6717ead3d]
/lib64/libstdc++.so.6(_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE6do_putES3_RSt8ios_basecm+0xd)[0x7fe6717eaf2d]
/lib64/libstdc++.so.6(_ZNSo9_M_insertImEERSoT_+0xbe)[0x7fe6717f71ee]
/usr/local/lib/libossim.so.1(_ZN11ossimString8toStringEj+0x163)[0x7fe67443de83]
/usr/local/lib/libossim.so.1(_ZN12ossimGeoTiff12parsePcsCodeEv+0x29)[0x7fe6749a6299]
/usr/local/lib/libossim.so.1(_ZN12ossimGeoTiff8readTagsEP4tiffjb+0x5b8)[0x7fe6749a9de8]
/usr/local/lib/libossim.so.1(_ZNK26ossimTiffProjectionFactory16createProjectionEP17ossimImageHandler+0x78)[0x7fe67488b9a8]
/usr/local/lib/libossim.so.1(_ZNK30ossimProjectionFactoryRegistry16createProjectionEP17ossimImageHandler+0x37)[0x7fe674900ba7]
/usr/local/lib/libossim.so.1(_ZNK25ossimImageGeometryFactory16createProjectionEP17ossimImageHandler+0x1d)[0x7fe67465a5cd]
/usr/local/lib/libossim.so.1(_ZNK25ossimImageGeometryFactory14extendGeometryEP17ossimImageHandler+0x127)[0x7fe67465a487]
/usr/local/lib/libossim.so.1(_ZNK26ossimImageGeometryRegistry14extendGeometryEP17ossimImageHandler+0x3b)[0x7fe67455495b]
/usr/local/lib/libossim.so.1(_ZN17ossimImageHandler16getImageGeometryEv+0x263)[0x7fe6746bd8d3]
/usr/local/lib/libOTBOSSIMAdapters-5.0.so.1(_ZN3otb21ReadGeometryFromImageERKSsb+0x1e6)[0x7fe67641fb46]
/usr/local/lib/libOTBApplicationEngine-5.0.so.1(_ZN3otb15ImageFileReaderINS_11VectorImageIfLj2EEENS_25DefaultConvertPixelTraitsIfEEE25GenerateOutputInformationEv+0x395)[0x7fe679889e35]
/usr/local/lib/libITKCommon-4.11.so.1(_ZN3itk13ProcessObject23UpdateOutputInformationEv+0xe4)[0x7fe6728ecbf4]
/usr/local/lib/libOTBApplicationEngine-5.0.so.1(_ZN3otb7Wrapper23InputImageListParameter19SetListFromFileNameERKSt6vectorISsSaISsEE+0x165)[0x7fe67987bc05]
/usr/local/lib/libOTBCommandLine-5.0.so.1(_ZN3otb7Wrapper19CommandLineLauncher14LoadParametersEv+0xdac)[0x7fe67a00ad6c]
/usr/local/lib/libOTBCommandLine-5.0.so.1(_ZN3otb7Wrapper19CommandLineLauncher13BeforeExecuteEv+0x432)[0x7fe67a00c712]
/usr/local/lib/libOTBCommandLine-5.0.so.1(_ZN3otb7Wrapper19CommandLineLauncher21ExecuteAndWriteOutputEv+0x15)[0x7fe67a00d675]
/usr/bin/otbApplicationLauncherCommandLine(main+0x1ed)[0x40343d]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x7fe6711aab35]
/usr/bin/otbApplicationLauncherCommandLine[0x403919]
======= Memory map: ========
00400000-00408000 r-xp 00000000 fd:00 25217074 /usr/bin/otbApplicationLauncherCommandLine
00607000-00608000 r--p 00007000 fd:00 25217074 /usr/bin/otbApplicationLauncherCommandLine
00608000-00609000 rw-p 00008000 fd:00 25217074 /usr/bin/otbApplicationLauncherCommandLine
01142000-0154b000 rw-p 00000000 00:00 0 [heap]
7fe634000000-7fe634021000 rw-p 00000000 00:00 0
7fe634021000-7fe638000000 ---p 00000000 00:00 0
7fe63848a000-7fe638504000 r-xp 00000000 fd:00 19691556 /usr/lib/otb/applications/otbapp_RandomForestTraining.so
7fe638504000-7fe638703000 ---p 0007a000 fd:00 19691556 /usr/lib/otb/applications/otbapp_RandomForestTraining.so
7fe638703000-7fe63870a000 r--p 00079000 fd:00 19691556 /usr/lib/otb/applications/otbapp_RandomForestTraining.so
7fe63870a000-7fe63870b000 rw-p 00080000 fd:00 19691556 /usr/lib/otb/applications/otbapp_RandomForestTraining.so
7fe63870b000-7fe638732000 r-xp 00000000 fd:00 19691555 /usr/lib/otb/applications/otbapp_QuantifyImage.so
7fe638732000-7fe638932000 ---p 00027000 fd:00 19691555 /usr/lib/otb/applications/otbapp_QuantifyImage.so
7fe638932000-7fe638935000 r--p 00027000 fd:00 19691555 /usr/lib/otb/applications/otbapp_QuantifyImage.so
7fe638935000-7fe638936000 rw-p 0002a000 fd:00 19691555 /usr/lib/otb/applications/otbapp_QuantifyImage.so
7fe638936000-7fe6389e1000 r-xp 00000000 fd:00 19691554 /usr/lib/otb/applications/otbapp_QualityFlagsExtractor.so
7fe6389e1000-7fe638be1000 ---p 000ab000 fd:00 19691554 /usr/lib/otb/applications/otbapp_QualityFlagsExtractor.so
7fe638be1000-7fe638bed000 r--p 000ab000 fd:00 19691554 /usr/lib/otb/applications/otbapp_QualityFlagsExtractor.so
7fe638bed000-7fe638bee000 rw-p 000b7000 fd:00 19691554 /usr/lib/otb/applications/otbapp_QualityFlagsExtractor.so
7fe638bee000-7fe638bef000 rw-p 00000000 00:00 0
7fe638bef000-7fe638caa000 r-xp 00000000 fd:00 19691553 /usr/lib/otb/applications/otbapp_ProfileReprocessing.so
7fe638caa000-7fe638ea9000 ---p 000bb000 fd:00 19691553 /usr/lib/otb/applications/otbapp_ProfileReprocessing.so
7fe638ea9000-7fe638eb6000 r--p 000ba000 fd:00 19691553 /usr/lib/otb/applications/otbapp_ProfileReprocessing.so
7fe638eb6000-7fe638eb8000 rw-p 000c7000 fd:00 19691553 /usr/lib/otb/applications/otbapp_ProfileReprocessing.so
7fe638eb8000-7fe638f07000 r-xp 00000000 fd:00 19691552 /usr/lib/otb/applications/otbapp_ProductFormatter.so
7fe638f07000-7fe639106000 ---p 0004f000 fd:00 19691552 /usr/lib/otb/applications/otbapp_ProductFormatter.so
7fe639106000-7fe639109000 r--p 0004e000 fd:00 19691552 /usr/lib/otb/applications/otbapp_ProductFormatter.so
7fe639109000-7fe63910a000 rw-p 00051000 fd:00 19691552 /usr/lib/otb/applications/otbapp_ProductFormatter.so
7fe63910a000-7fe639139000 r-xp 00000000 fd:00 19691551 /usr/lib/otb/applications/otbapp_ProSailSimulatorNew.so
7fe639139000-7fe639338000 ---p 0002f000 fd:00 19691551 /usr/lib/otb/applications/otbapp_ProSailSimulatorNew.so
7fe639338000-7fe63933a000 r--p 0002e000 fd:00 19691551 /usr/lib/otb/applications/otbapp_ProSailSimulatorNew.so/usr/bin/otbcli: Zeile 29: 22621 Abgebrochen $OTB_CLI_LAUNCHER "$@"
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lnicola
commented on May 24, 2024
We'll have to look into this, but I believe the packages work with libgeotiff.so.2 and either of libgeos-3.4.2.so or libgeos-3.5.0.so.
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atrawog
commented on May 24, 2024
I think I have found the problem.
The script install_script/sen2agriPlatformInstallAndConfig.sh adds the @pgdg94 repository which also includes the libgeotiff-1.4.0-1 and geos-3.5.0-1 package.
If you compile from source using packaging/Sen2AgriBuildAll.sh before running sen2agriPlatformInstallAndConfig.sh. OTB is compiled against libgeotiff-devel-1.2.5-14 from the @epel and you end up with the problems I had.
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lnicola
commented on May 24, 2024
Right, that makes sense. Sorry for the inconvenience, building the packages is rather unfriendly right now.
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lnicola
commented on May 24, 2024
@atrawog For what it's worth, I have an experimental Docker image for building the RPM packages. It's not much, but it will hopefully make things easier.
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