Name: Sarah Djebali
Type: User
Company: INSERM
Bio: Initially trained as a computer scientist, I did my phD on gene finding (Exogean), and then participated to many functional annotation consortia (ENCODE, FAANG)
Location: Toulouse, France
atac_pipe
Simple pipeline for processing paired end ATAC-seq data
compmerge
Merges transcripts with compatible intron chains
comptr
Compare two sets of transcripts in terms of intron chain
docs
Documentation for SeqOccin SV project
duplseq
Computes direct repeats at junction boundaries (including chimeric junctions)
enhancergene
This is a repository for scripts and programs developped for the identification of enhancer/gene relationships in animal genomes
filtersmallpseudo
Filters out small transcripts and pseudogenes from a Gencode annotation file in gtf format
fragencode-atacseq-pipeline
This is the pipeline to process ATAC-seq data from fastq to peaks used in the FR-AgENCODE project
fragencode-rnaseq-mapquantassemble
This is the pipeline to process RNA-seq data from fastq to reference and new transcript and gene expression used in the FR-AgENCODE project
makegenccagetss
Makes TSS clusters from Gencode TSS and CAGE peaks
makegencodetss
Makes distinct TSS of each gene from a Gencode annotation
makesp
Compute segmented projections from an annotation
overlap
Intersect two sets of genomic segments in gff2 format
paintorpipe
Pipeline to run the Paintor program and its associated visualization tools on GWAS summary statistics data
scripts
Bash, awk, R, python scripts and binaries for genomic and transcriptomic data analysis
smrnaseq
A small-RNA sequencing analysis pipeline
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
