sdentro Goto Github PK
Name: Stefan Dentro
Type: User
Company: DKFZ
Twitter: stefan_seq
Location: Heidelberg, Germany
Name: Stefan Dentro
Type: User
Company: DKFZ
Twitter: stefan_seq
Location: Heidelberg, Germany
Battenberg R package for subclonal copynumber estimation
Script to create Y chromosome SNPs for Battenberg
Estimate total copy number from logR data
Battenberg output templates
Bioconductor copynumber package with hg38 and mm10
Dockstore implementation of CGP core WGS analysis
Dirichlet Process based methods for subclonal reconstruction of tumours
Dirichlet Process Clustering Pre-Processing Pipeline
ICGC PCAWG-11 pipeline used for assignment of SNVs, Indels and SVs to consensus mutation clusters
ICGC PCAWG-11 consensus copy number pipeline
Code to create a copynumber event inventory for ICGC PCAWG
ICGC PCAWG-11 Calibration code for subclonal architecture
Parser for ICGC consensus CN to Battenberg format
A collection of modern/faster/saner alternatives to common unix commands.
An R script to time somatic mutations
Nextflow implementation of the alleleCounter tool
QDNAseq package for Bioconductor
Establish random subclonal reconstructions from mutation data
RandomClone Single SMC-het pipeline
Code to summarise replication timing data
R package for logR-based copy number profiling for shallow coverage/single cell (SC) experiments
Functions for SMC-het pipelines
Pipeline to call significant imbalance of heterozygous SNPs
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