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16s_qiime2

Snakemake based 16S QIIME2 pipeline

abdiv

Alpha and beta diversity measures for community ecology

abxidx

adonisplus

amgma

Annotation of Microbial Genomes by Microbiome Association

anvio

An analysis and visualization platform for 'omics data

awesome-r

A curated list of awesome R packages, frameworks and software.

bacdiver

R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber)

basicrstudiotemplate

An Rstudio Template for bioinformatics

basictemplate

Basic R markdown template

binding_sites

Simple python script to assist with identifying matching genetic binding sites.

bolivar_med_exp

centrifuge

Run Centrifuge on metagenomic samples and generate bubble plot visualizations.

centrifuge-patric

Run Centrifuge on Stampede2 and get genomes for downstream applications

chop_metadata_checker

cocoalumberjack

A fast & simple, yet powerful & flexible logging framework for Mac and iOS

code_review_2019_07_24

purr_map demo

cookiecutter-pylibrary

Enhanced cookiecutter template for Python libraries.

datasciencecoursera

datasharing

The Leek group guide to data sharing

demic

DEMIC PTR analysis software in the form of an R package

demuxgo

A demultiplexing tool for fastq sequence files

dnabc

Identify DNA barcodes in high-throughput sequencing data files

dungeonfs

A FUSE filesystem and dungeon crawling adventure game engine

filter-vcf

Simple script that filters a vcf file based on quality of given alternate allele

fizkin

PBS script for HPC

fly_punnett

Old iOS app created back in 2011

forget-the-king

Tired of the king; time to let him know

fun-with-fastq

Just some python practice with fastq files

functree-ng

An interactive radial tree for functional hierarchies and omics data visualization