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agr-jbrowse

JBrowse configuration stuff for AGR

alliance_test_seqpanel

simple test app for GenericGeneSeqPanel with Alliance data

amplify-test

testing with aws amplify

apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin

azure-mud

biotoolbox

Tools for querying and analysis of genomic data

chado_test

test svn import of chado repository

colorbycds

A JBrowse plugin to color the features and DNA track according the coding frame

containers

Bioinformatics containers

crav4

docker-tripal

Docker container for Tripal

filterplugin

A JBrowse plugin implementing the filter API

flybase-jbrowse

Demo JBrowse docker config for FlyBase

fullscreen-jbrowse

Fullscreen plugin for JBrowse

get-fasta-sequence

web app for getting fasta sequences from a bgzipped fasta file

gmodinthecloud

jbplugin-screenshot

JBrowse plugin that adds button which uses phantomJS to take browser screenshot

jbrowse

A modern genome browser built with JavaScript and HTML5.

jbrowse-components

Monorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, and core plugins. To customize behaviors, write an in-house plugin.

jbrowse-hg19

Simple JBrowse instance that serves the hg19 (human) gene set

jbrowse-jupyter-examples

Example jupyter notebooks that use JBrowse

jbrowse-plugin-list

List of plugins for the JBrowse 2 plugin store.

jbrowse-proxy

Proxy to avoid CORS issues

jbrowse-site-specific-help

A JBrowse 2 plugin to make a site specific help widget

jbrowse_genomes_of_interest

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

manet

Website screenshot service powered by Node.js, SlimerJS and PhantomJS

manet-dockerfile

A dockerized image of https://github.com/vbauer/manet

modencode-gbrowse_conf

modencode gbrowse configuration

motiffinder

Port of the MotifFinder plugin to JBrowse plugin