Comments (3)
scott-griffiths
commented on August 20, 2024
Hi. I'm not sure what exactly 'illuminate' is in this context so I can't really take a look.
The underlying issue is that there is no class called BitString in the bitstring library. There did used to be, but it was deprecated a long time ago and the final alias for it was removed in bitstring 4.0.
I'd suggest using pip to install bitstring 3.1.9 as the most recent one that may work. Chances are that a dependency on bitstring was added somewhere without limiting the version number, so you have ended up with the latest version which is no longer compatible.
from bitstring.
scott-griffiths
commented on August 20, 2024
I just checked - the BitString class was deprecated over 13 years ago! 😄
from bitstring.
hddesai
commented on August 20, 2024
wow! Good to know - I will look for other solutions. I appreciate the help and quick feedback. :). I think I tried 3.1.9 and had the same issue. I was just trying to test illuminate which parses illumina interop folders for sequencing run metrics to see if it's a good solution. There's other packages out there.
from bitstring.
Related Issues (20)
- 4.2.0: Bitarray(bytes=...) constructor no longer accepts list of bytes (or integers) HOT 2
- Unpack decoding error HOT 2
- 4.2.0: Typing of BitStream-slice HOT 3
- 4.2.0 crashes upon import when PYTHONOPTIMIZE is set to 2 or larger HOT 2
- 4.2.0: BitArray.join() no longer ignores None types HOT 2
- Change string representation of dtypes to short version when available. HOT 1
- 4.2.x: Reading past the end of stream no longer raises ReadError HOT 2
- Significant slowdown in find / findall for some cases since version 4.1. HOT 7
- DeprecationWarning: invalid escape sequence in tests HOT 1
- Test failures due to lack of gfloat formats import HOT 2
- `BitStream.__add__` throws `AttributeError: 'Bits' object has no attribute '_pos'` HOT 3
- Add levels to dtype definitions in the dtype register HOT 1
- Add offset to Dtype
- Some exotic float codes representing negative zero converted to positive zero.
- Auto scaling rounding wrong way on occasion.
- More configurable default options for pp
- Bug initializing an Array from bytes? HOT 2
- Gfloat version requirement HOT 3
- Request full structure definition. HOT 6
- struct formats `i` and `I` not supported.
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from bitstring.