schwancr Goto Github PK

cca

implementation of a specific version of CCA where one space is one-dimensional. Maybe I'll extend it later

ccv

C-based/Cached/Core Computer Vision Library, A Modern Computer Vision Library

concerto-platform

Automatically exported from code.google.com/p/concerto-platform

d3-cloud

Create word clouds in JavaScript.

datatracker

Python app to track and store data fetched from the web.

deepdive

DeepDive

exchange

code for modeling exchange experiments within the MSM framework (e.g. FPOP, H-D exchange)

ezdxf

Python interface to DXF

fah_tica

information

Some information theory stuff -- transfer entropy, etc.

ionmf

Integrative orthogonal non-negative matrix factorization

kbn_network

Network Plugin for Kibana

klearn

algorithms for using kernel methods for learning

leaflet

:leaves: JavaScript library for mobile-friendly interactive maps

mdtraj

Molecular Dynamics Trajectory and File IO

msmbuilder

Statistical models for biomolecular dynamics

msmbuilder-legacy

Extensible software for building Markov State Models for Biomolecular Conformational Dynamics

msmexplorer

MSMExplorer is a visualization system for markov state models for protein folding networks

mullermsm

Markov State Models on the Muller potential: a MSMBuilder Tutorial

openmm

OpenMM is a toolkit for molecular simulation using high performance GPU code.

particles

sklearn for particles

pdbfetcher

Simple python API for querying the RCSB PDB for structures

pdbfixer

PDBFixer fixes problems in PDB files

poplda

psycopg2

Python PostgreSQL adapter

pymf

Python Matrix Factorization Module

rxn-coord

implementation of reaction coordinate evaluator detailed by Gerhard Hummer (Best & Hummer. PNAS 2005, 102 pp6732-7)

schwancr_bin

Collection of scripts that I have made over the last three years

scikit-learn

scikit-learn: machine learning in Python

scipy

Scipy library main repository