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170110

annotationhub

Client for the Bioconductor AnnotationHub web resource

archr

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

arrayfire

bcl2fastq

NextSeq specific bcl2fastq2 wrapper.

biofiles

R interface to GenBank/GenPept files

callnucleosomes

chipqc

cite-seq-count

A tool that allows to get UMI counts from a single cell protein assay

cometsc

COMET Single-Cell Marker Detection tool

conga

Clonotype Neighbor Graph Analysis

cut-and-run

data_etc

repo for some data files

deep-learning-with-r-notebooks

R notebooks for the code samples of the book "Deep Learning with R"

differ

Differ is a rust library for finding the differences between two sequences.

dropseqtools

egsea

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

f-sclvm

fcsparser

a python parser for reading fcs files supprorting fcs 2.0, 3.0, 3.1

henipipe

Pipeline for CnR, CnT

kgraph

A library for k-nearest neighbor search

lassonet

Feature selection in neural networks

m3addon

mergebams

Merge bam files with intelligent cell barcode preservation

mutcaller

call mutations in 10X data

nhptregil2

Analysis of IL2 NHP Treg data

piperna

Making bulk RNA seq analysis easier

probedeeper

Making the Analysis of Microarray Data More Efficient

py_bowtie_fastq_2_sam

takes folder of paired end fastq files and generates a single sam file

pybam

Very simple, pure python, BAM file reader