scbirlab Goto Github PK

Name: SCBIR Lab

Type: Organization

Location: London, UK

SCBIR Lab's Projects

Public profile repo

💻 Interconverting FASTA, GFF, and CSV.

🪨 Useful python utilities.

🌱 Designing CRISPRi experiments in bacteria

Conda environment definition files for making environments that are useful for various analysis tasks

🏮 Parsing and analysing platereader absorbance and fluorescence data.

🔴🟢🔵⚫️ Generating sets of random DNA sequences optimized for use in high-throughput sequencing.

🧠 Deterministically encode text as mnemonic adjective-noun pairs.

🧬🔍 Nextflow pipeline to process demultiplexed Illumina paired-end FASTQ files from INSPECT experiments.

Nextflow pipeline to call variants from Nanopore FASTQ files from bacterial clones relative to a wildtype control.

Nextflow pipeline to process Nanopore POD5 files from multiple bacterial samples into a gene x cell count table

Process files from Biotek platereaders, normalise output, perform QC, make plots, and do statistical tests.

Nextflow pipeline to process demultiplexed Illumina paired-end FASTQ files from multiple bacterial samples into a gene x cell count table.

⛓️ Automating construction of oligo library sequences for oligo array synthesis.

Lab website

⬢⬢⬢ Organizing and processing tables of chemical structures.

🧬 Python utilities for working with nucleotide sequence strings.