SBML Team's Projects
Archive of CD-ROMS we produced in 2003
Design Explorer and Viewer for Iterative SBML Enhancement of Representations
Git pre-commit hook for enforcing legal filenames on windows
Material related to SBML.
Paper published in the Journal of Integrative Bioinformatics in 2019
JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Markup Language) and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.
a C++ library for working with the COMBINE Archive format
XML read/write pulled out of libSBML
The XML parser portion of LibSBML as a separate library.
LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
Scripts and utilities used to build and deploy a libSBML release
Set of dependencies for compiling libSBML
SBML logo artwork and their terms of use
Tests for infix-to-mathML and mathML-to-infix for both libsbml and jsbml.
MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
A summer project to develop a fresh new SBML Software Guide
The Online SBML Validator is an SBML validation service offered at SBML.org.
🔄 More than 60 spinners for terminal, python wrapper for amazing node library cli-spinners
Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
DEVISER Edit, an UI for defining DEVISER input files
Overall repository for the SBML Level 3 paper submitted to MSB
Setup for running latexdiff on the SBML Level 3 paper
Copy of Overleaf project for the SBML Level 3 paper submitted to MSB
Response to reviewers for SBML Level 3 paper submitted to MSB
Repository of models to test exchange of sbml-spatial models.
The specification documents for SBML.
The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.