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allen-visual-behavior-fam-analysis

Allen Visual Behavior : Familiarity Analysis

allenccf

Tools to work with Allen Inst CCF data in matlab

bg-gitbook

Mirror of the brainglobe GitBook page

bg-heatmaps

Rendering heatmaps in brainrender

brainreg-segment

Segmentation of 3D shapes in a common anatomical space

braintracer

Processing pipeline for cellfinder. Quantifies cell positions and produces figures for visualising cell distributions across datasets.

cocoframer

COmmon COordinate FRAMEwork in R

dlcutils

Various scripts to support deeplabcut and what to do afterwards!

fastmap

ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing

functionalneuromics

iss

Code for analysis of in situ sequencing

knn-graphs

MATLAB functions for creating k-nearest neighbor graphs

learning-git-github-2421501

minis

'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/currents in whole-cell patch clamp recordings and to estimate the quantal size in the central synapse.

neuroconv

Extract metadata from Bonsai outputs

npy-matlab

Experimental code to read/write NumPy .NPY files in MATLAB

pciseq

A probabilistic cell typing algorithm for spatial transcriptomics.

plugin-gui

Software for processing, recording, and visualizing multichannel electrophysiology data

precourse

A repo for the pre-course work at home exercises

pystarters

spectral-clustering-demo

A fun review of spectral clustering with MATLAB demos I made for the NU machine learning meetiup in 2014

treba

Learning trajectory representations using self-supervision and programmatic supervision.

website

brainglobe.info website