Saugat Poudel's Projects
Pan-genome construction/analysis tools centered around PATRIC and antimicrobial resistance
Staph data for gosling
Code and interim data for the manuscript "Coordination of CcpA and CodY regulators in Staphylococcus aureus USA300 strains"
RNAseq Workflow used in publication "Characterization of CA-MRSA TCH1516 exposed to Nafcillin in Bacteriological and Physiological Media"
This repo demonstrates the code used to correct batch effects in RNAseq data. It is used and shared as part of the publication: Characterization of CA-MRSA TCH1516 exposed to Nafcillin in Bacteriological and Physiological Media
A fast constructor of the compressed de Bruijn graph from many genomes
Results, data, model and code for the paper 'Interpreting roles of mutations associated with the emergence of S. aureus USA300 strains using transcriptional regulatory network reconstruction'