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Hey, I'm Samuel Ortion.

Computational biology student at Université d'Évry val d'Essonne, Université Paris-Saclay in M.Sc. Genomics, Informatics and Mathematics for Health and Environment (GENIOMHE).

  • 🌱 I’m learning Answer-Set Programming.
  • 👯 I’m looking to collaborate on in silico biology inspired simulations.

Profile picture artwork by J. Bastière.

Samuel Ortion's Projects

birdnet-stream icon birdnet-stream

Realtime BirdNET powered soundscape analysis for bird song identification.

geniomhe-oop-sc icon geniomhe-oop-sc

Reimplementation of core scanpy plot with Plotly powered visualization.

ob-pasp icon ob-pasp

Org-Babel mode to execute Clingo Potassco code within Org-mode

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

wgddetector.smk icon wgddetector.smk

Snakemake port of WGDdetector, a pipeline to detect Whole Genome Duplications (Yang et al 2019)

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