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bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

carnival

CAusal Reasoning for Network Identification with integer VALue programming in R

cellphonedb

cosmosr

cxp-lite

Profiling Neuronal Activity from Fluorescence Imaging Data

dorothea

R package to access DoRothEA's regulons

ea-utils

Automatically exported from code.google.com/p/ea-utils

fastgene

Map Mouse <-> Human gene equivalent symbol

gseapy

Gene set enrichment analysis using Python

indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

indra_cogex

INDRA Context Graph Extension

kinase_tf_mini_tuto

This is a short tutorial to show in parallel how to estimate TF and kinase activities from transcriptomic and phosphoproteomic data

local_files

mrinal-subash.github.io

netboxr

An R package to mark functional modules in the network analysis using data from pathwayCommons

nextclade_data

Datasets for https://github.com/nextstrain/nextclade

panacea_indra

INDRA applications for the DARPA Panacea project

portfolio

Hi. Welcome to my portfolio.

pyobo

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

repo_test

rnaseq-gui

Python based bulk-RNASeq pipeline to pre-process paired-end or single-end samples

samuelbunga.github.io

Portfolio

scrna_custom_scripts

This is a repository which contains all the custom developments for single cell RNA-Seq pipelines

single_cell_wizard

Single Cell Wizard

singlecell_model_analysis

All model analysis of neuro-immune single cell data