Name: Samuel Marsh
Type: User
Company: Boston Childrens Hospital/HMS/Broad Institute
Bio: Postdoctoral Fellow.
Interested in Neuroimmunology, Single Cell, and Neurodegenerative Disease
Twitter: samuel_marsh
Location: Boston, MA
Blog: samuel-marsh.science
Samuel Marsh's Projects
Extract gene names within +-500kb of all known Alzheimer's disease SNPs passing genome-wide significance
Functions for colors in R
ggplot2 extension inspired by GraphPad Prism
Repository for "pseudo"-objects based on analysis in Hammond et al., 2019 (https://doi.org/10.1016/j.immuni.2018.11.004)
High dimensional weighted gene co-expression network analysis
R package for integrating and analyzing multiple single-cell datasets
Code to reproduce analysis objects for the data contained in https://www.biorxiv.org/content/10.1101/2020.12.03.408542v1
Code to reproduce analysis objects for the data contained in Marsh et al., 2022
R package to visualize gene expression data based on weighted kernel density estimation
Repository for personal website. Made using postcards R package.
Clone of the Bioconductor repository for the scater package.
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
A package to help convert different single-cell data formats to each other
Scripts for passing single cell analyses from R objects to python packages and back.
Clone of the Bioconductor repository for the scuttle package.
R toolkit for single cell genomics
Community-provided extensions to Seurat