Comments (4)
jkbonfield
commented on September 27, 2024
1
We're currently working through old PRs/Issues slowly to try and get the backlog down, but it's a challenging process. Good spot and thanks. :-)
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jkbonfield
commented on September 27, 2024
Agreed, then mention of Golomb coding there is incorrect as that codec can only write to the CORE block. This looks like an idea which was never implemented. The non-encoding version is the correct one, just treating external blocks as a byte stream.
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vadimzalunin
commented on September 27, 2024
Looks like a copy-paste mistake.
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jmthibault79
commented on September 27, 2024
Resolved by #359
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Related Issues (20)
- cram: Inconsistent descriptions of auxiliary tag types HOT 1
- SA tag CIGAR format
- vcf: Handling structured header records with missing IDs in VCF 4.1/4.2 HOT 1
- bcf: First phasing indicators not set in genotype (GT) value examples
- CSI file is BGZF compressed but this is not mentioned in the CSV1 spec HOT 2
- Questions about third-party use of test data HOT 6
- VCF Draft 4.5 and Modified Bases HOT 29
- VCF4.4 SVLEN requirement across different variant representations HOT 6
- refget: v2 spec for Range header errors does not align with typical usage
- vcf: Invalid unstructured header line in VCF 4.3 example `complexfile_passed_000.vcf` HOT 2
- VCF format: correct representation of complex indels and MNPs HOT 5
- Number, type and description on FORMAT not in sync with List of changes
- FORMAT field CICN and its relation to CN field
- BED "chrom" field regex is inconsistent with existing practice HOT 5
- Using ChaCha20-Poly1305 for encryption is NOT FIPS140-3 compliant and not justified and is considered unprotected plaintext HOT 3
- vcf: VCF 4.5 gVCF example has off-by-one errors
- INFO CIPOS Number=2xA
- INFO/END should not be deprecated HOT 14
- MM tag preferred format for TAPS data HOT 1
- 0-based coordinate system error in sam spec? HOT 2
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