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Samrat Ghosh's Projects

fasconcat icon fasconcat

FASconCAT is a user-friendly software that concatenates rapidly different kinds of sequence data into one supermatrix file. Output files are either in FASTA, PHYLIP or NEXUS format and are directly loadable in phylogenetic programs like PAUP*, RAxML or MrBayes. FASconCAT can handle FASTA, PHYLIP and CLUSTAL formatted input files in one single run. It provides useful information about each input file and the concatenated supermatrix.

intro-to-rnaseq-hpc-orchestra icon intro-to-rnaseq-hpc-orchestra

This repository has teaching materials for a 2-day Introduction to RNA-sequencing data analysis workshop using the Orchestra Cluster.

plasforest icon plasforest

A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes

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