samhuairen Goto Github PK
Name: Huairen Zhang
Type: User
Company: Nanjing Agricultural University
Location: Nanjing China
Name: Huairen Zhang
Type: User
Company: Nanjing Agricultural University
Location: Nanjing China
This is the pipeline of 2020 STAR Protocols
align snp primers to a specific genomic gene sequence
Atwell et al data
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Smart VCF parser DSL
some R and python scripts for BS-seq(Whole-genome bisulfite sequencing)
My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; Molecular Evolution; Genomic Data Science and Clustering; Finding Mutations in DNA and Proteins; Bioinformatics Capstone: Big Data in Biology)
Find CRISPR binding sites
Jupyter notebooks for the code samples of the book "Deep Learning with Python"
notebook scripts for deepping learning with python
Tools to process and analyze deep sequencing data.
Differential gene expression analysis based on the negative binomial distribution
General tools for genomic analyses.
Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.
Command-line tool for the visualization of splicing events across multiple samples
Graph-based alignment (Hierarchical Graph FM index)
Impute GBS genotype
Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions.
S4 class in R
High-resolution genetic mapping for pooled sequencing.
A novel algorithm for BSA-Seq data analysis
R code for creating Manhattan plots and Q-Q plots for GWAS
QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
"re-Searcher" is a toolbox aimed to simplify the task for genomics data mining from big VCF files.
some scripts and pipelines for analysis RNA-seq
A data science IDE for Python
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.