cfu_analysis

chamber_of_fluorescence

Machine code for the Chamber of Fluorescence laboratory equipment

cnn_regression

This is a simple CNN model used for image recognition and regression

dynamic_unet

A somewhat dynamic implementation of the Unet CNN that can be easily changed modified

entropy_dic

Using a 2D entropy filter to segment DIC (Differential Interference Contrast) imaging of cells

homework

Homework folder to sync across multiple computers

igtd

Image Generator for Tabular Data (IGTD): Converting Tabular Data to Images for Deep Learning Using Convolutional Neural Networks

lightsaver

Fluorescent analysis of individualized C. elegans without using neural networks

max

pretrained-backbones-unet

A PyTorch-based Python library with UNet architecture and multiple backbones for Image Semantic Segmentation.

python_to_grbl

A simple open-source python 🐍 to grbl 🤖 sender || Controlling 3-axis GRBL/CNC/gcode machines with python over a serial/usb connection that waits for completion of movement before sending the next command

realtime_animegan

This is a simple learning experiment to see if i can take a webcam video and apply different types of Networks to the data without writing to the disk while keeping the data in the pytorch cuda tensor

references

sa-unet

The open source code of SA-UNet: Spatial Attention U-Net for Retinal Vessel Segmentation.

sa-unet-dynamic

Spatial Attenuation - Unet with dynamic model depth creation

sam-freitas

segmenteverygrain

A SAM-based model for instance segmentation of images of grains

semantic-segmentation-loss-functions

This Repository is implementation of majority of Semantic Segmentation Loss Functions

sicko

Systematic Imaging of C. elegans Killing Organisms

sicko_imager

sicko_neural_network

This is a segmentation model to extract C elegans bodies from fluorescent images taken with the SICKO system

static_imaging_rig

sutphin_lab_utilities

Utilities for the sutphin lab