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Beginning Perl for Bioinformatics · 生物信息学 Perl 语言入门(中文版)
ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposable elements (TEs) in the human genome using next-generation sequencing (NGS) data. We evaluated the tools using both simulated and real benchmark whole-genome sequencing (WGS) datasets. ERVcaller is capable to accurately detect various TE insertions of any lengths, particularly ERVs. It allows for the use of a TE reference library regardless of sequence complexity, such as the entire RepBase database. It is easy to install and use with command lines.
ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed in their RNA seq data.
helixlife-WGCNA-2018 https://github.com/xndless/helixlife-WGCNA-2018.git
my first R package just for testing
二代测序数据分析
By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
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Quantitative Genetics Tools for Mapping Trait Variation to Mechanisms, Therapeutics, and Interventions - Webinar Series
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