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a3fe

Automated Adaptive Absolute alchemical Free Energy calculator

acyper

af2bind

allennlp

An open-source NLP research library, built on PyTorch.

alphaflow

AlphaFold Meets Flow Matching for Generating Protein Ensembles

alphafold

Open source code for AlphaFold.

alphafold2-chinese

中文版AlphaFold2体验

alphafold_pytorch

An implementation of the DeepMind's AlphaFold based on PyTorch for research

ambermdrun

ankh

Ankh: Optimized Protein Language Model

ap-lasr

apptainer

Apptainer: Application containers for Linux

atlas

ATLAS - Three commands to start analyzing your metagenome data

awesome-ggplot2

A curated list of awesome ggplot2 tutorials, packages etc.

bert-loves-chemistry

bert-loves-chemistry: a repository of HuggingFace models applied on chemical SMILES data for drug design, chemical modelling, etc.

beta-lac-protein-design

Analysis scripts and data for the manuscript "Simultaneous Enhancement of Multiple Functional Properties Using Evolution-informed Protein Design"

bio_embeddings

Get protein embeddings from protein sequences

biopandas

Working with molecular structures in pandas DataFrames

bmdca

Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).

byprot

carbonmatrix_public

change-top-web

处理GROMACS非标准残基的在线工具

chroma

A generative model for programmable protein design

clean

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

code-for-turbopetase

code for TubroPETase paper

codonbert

Repository for mRNA Paper and CodonBERT publication.

colabfold

Making Protein folding accessible to all!

confit

contrastive-finetuning-plms

Optimizing protein language models with Sentence Transformers

coves

Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)