Comments (2)
cmball1
commented on June 18, 2024
The following Dockerfile's were compared, the following were found to have no functional differences:
bcftools
bedops
convert_to_1000g_ids
fastqc
hisat2
add_pos_info_to_sumstats_by_rsid
generate_ld_regression_input_json
plot_ld_regression_results
ldsc
metal
multiqc
plink
regtools
rseqc
rvtests
salmon
samtools
structure
trimmomatic
ucsc_utils
Dockerfile's with functional differences:
adjust_csv_pvalue - Script was added to different file path in Dockerfile
htslib - Different CMD's. code version not in WDL.
from biocloud_docker_tools.
cmball1
commented on June 18, 2024
Added the follow missing images:
bedtools
bicmix
deseq2
dexseq - v3.9 existing (v1.39), add v3.11
drimseq
edger
eigenmt
eigensoft
epidish
extract_by_id
fastqtl
fgwas
htseq
matrix_eqtl
merge_salmon_quant
metaxcan
prepare_metaxcan_input
minimac4
peer
plier
qc_parser
rediscoverte
salmonte
wgcna
from biocloud_docker_tools.
Related Issues (15)
- Create script for converting to standard GWAS summary stats format HOT 1
- Build failing for rseqc/v3.0.0
- dexseq version numbers HOT 1
- Mirror Docker hub images to ECR HOT 1
- Update Docker Hub repos in WDL workflows
- Use ECR Docker images for WDL workflows HOT 1
- Modify make_gwas_summary_stats to work with Genesis files
- Not able to build dexseq/v1.30.0/Dockerfile
- Not able to build plink/v2.0/Dockerfile
- Develop R script for relatedness filtering
- Update handling of X chromosome by ID conversion script
- Create new variant ID conversion script
- Update GitHub action to handle files being moved
- Build failing for dexseq/v3.9 HOT 1
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