rsinghlab Goto Github PK

altumage

chromage

Private repository for the chromatin age prediction project developed by Lucas and Haider.

cliniqir

Code for the paper: Unsupervised Diagnostic Decision Support via Information Retrieval

cornn

Compartment prediction using Recurrent Neural Network

gc-merge

This is the repository for the long-range interaction GCNN for predicting gene expression for the Singh Lab.

gnn-tumor-seg

Using Graph Neural Networks to Segment MRIs of Brain Tumors

gnn_microscopy_segment

Memory Efficient Semantic Segmentation of Large Microscopy Images Using Graph-based Neural Networks

graphic

A graph neural network based approach to impute missing Hi-C reads.

hi-cy

histoneclocks

This repository contains the code and data to reproduce the results of our paper entitled "Histone mark age of human tissues and cells".

maddi

This repository is for the Multimodal Alzheimer’s Disease Diagnosis framework (MADDi).

ovo

pyaging

A Python-based compendium of GPU-optimized aging clocks.

scgraphic

A graph deconvolution approach to predict Hi-C contact map from pseudo-bulk scRNA-seq.

scmultiomics_datasets

Datasets for the scGRN project

scnode

scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction

scootr

Single-cell CO-Optimal TRansport for jointly aligning cells and genomic features of single-cell multi-omic datasets

scot

Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data

scrnaseq_coexpression_benchmark

A benchmark of existing gene co-expression estimator on scRNA-seq data.