rsenft1 Goto Github PK
Name: Rebecca Senft
Type: User
Company: Broad Institute
Bio: Postdoc @Broad working to develop bioimage analysis methods in the Cimini Lab.
Twitter: senftrebecca
Location: Cambridge
Rebecca Senft's Projects
2021-video-games
Code for making graphs in R with stats on the video games my partner and I played in 2021
2023-video-games
R code to visualize video game data from 2023!
another_test_jupyterbook
auto-basket-detector-2d
ImageJ macro scripts for analyzing fluorescent microscopy images: segmenting cells, divide into quadrants, and quantify innervation
cellprofiler
An open-source application for biological image analysis
cellprofiler-analyst
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
cellprofiler-plugins
Community-contributed and experimental CellProfiler modules.
core
Core classes and components used by CellProfiler
documentation
eldenring
Radar plot visualization of starting stats for EldenRing character classes
example-workflows
These are example workflows created via COBA's support of Driving Biomedical Projects (DBP) via our P41 grant from the NIH.
fiji-figure-generator
Useful scripts for saving multichannel fluorescence images for use in figures and saving relevant metadata
fish-ihc-colocalization-in-imagej
An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.
fpbase-interactive-app
Toy r shiny app for querying fpbase
jump-orf-data
New ORF data repo
miccheck
Microscopy Metadata Checklist Generator in Shiny
miccheck-uploader
Uploader app for custom microscopy metadata examples for MicCheck
miccheck-v2
Updated version of Microscopy Metadata Checklist app (shiny)
miccheck_v2
Shiny app for microscopy metadata reporting
microscopyforbeginnersreferenceguide
A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
mouse-wheel-running-analysis
Scripts for analyzing wheel running data from custom raspberry pi system in R
profiling-recipe
Image-based Profiling Recipe
quarto-web
Quarto website
quarto-website-template
Fork to create a Quarto website
rsenft1.github.io
my personal academic website and blog
test_binder_jupyter
tutorials
CellProfiler tutorial pipelines and images
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