rraadd88 Goto Github PK

followers: 20.0 following: 112.0 repos: 45.0 gists: 0.0

Type: User

Systems biology

`parag`🎆Interactive visualization of higher-order graphs in Python

`chrov`🧬Chromosome Visualizations

Synthetic biology

`beditor`🔂A workflow for designing libraries of sgRNAs for CRISPR base editing

Single-cell imaging

`htsimaging`🔬Python package for high-throughput single-cell imaging analysis

Machine learning

`interpretable`🧰Interpretable machine learning toolbox

Bioinformatics

`dseq`🧱Deep sequencing analysis in dataframes

General-purpose toolbox

`roux` 🧰Convenience functions in Python

⬆️Solo-coding

⬇️Collaborative coding:

`safepy`🕸️Python implementation of Spatial Analysis of Functional Enrichment (SAFE)

`SGAtools`(🇷)One-stop analysis and visualization of array-based genetic interaction screens

`removestar`️⃣Tool to automatically replace 'import ' in Python files with explicit imports

`yeast_segmentation`🔬User friendly mask-rcnn segmentation for images of yeast cells

rraadd88's Projects

adjusttext

A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.

aneuploidy_dependencies

scripts for plots

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-biological-image-analysis

A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.

awesome-biological-visualizations

A list of web-based interactive biological data visualizations.

awesome-datascience

:memo: An awesome Data Science repository to learn and apply for real world problems.

awesome-network-analysis

A curated list of awesome network analysis resources.

awesome-python-data-science

Probably the best curated list of data science software in Python.

beditor

A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more

bredictor

for prediction of base editing outcomes

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

chrov

🧬Chromosome Visualizations

dnafeaturesviewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

dndscv

dN/dS methods to quantify selection in cancer and somatic evolution

drugz

DRUGZ software

dseq

dseq: Deep sequencing analysis in dataframes

flex_r

FunctionaL Evaluation of eXperimental perturbation (i.e. genome wide knockout) screens

gnt

hts_matlab

matlab scripts for analysis of HT-screens. (deprecated).

htsimaging

🔬Python package for high-throughput single-cell imaging analysis.

jupyter2slides

Cloud Native Presentation Slides with Jupyter Notebook + Reveal.js

kipoi

Kipoi's model zoo API

kipoi-gwas

masonry

orthrus

parag

parag🎆Interactive visualization of higher-order graphs in Python

pdfannots

Extracts and formats text annotations from a PDF file

pitter

Python implementation of gitter

printor

prodigy

Repository containing various scripts to predict the binding affinity of protein-protein complexes from structure