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bedtools2

A powerful toolset for genome arithmetic.

bwa

Burrow-Wheeler Aligner

cutadapt

cutadapt removes adapter sequences from DNA sequencing reads

dap

demux_cellranger_preeclampsia

Demultiplexing pipeline with demuxlet for the preeclampsia project (hg38)

ds18b20-photon

Dallas One-Wire temp sensor DS18XXX Particle Photon

dx-toolkit

DNAnexus platform client libraries.

etherpad-lite

Really real-time collaborative document editing for the rest of us

fastq-tools

Small utilities for working with fastq sequence files.

fgwas

Functional genomics and genome-wide association studies

fig1

gada

Fast segmentation tool for copy number detection analysis in C

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

kallistobustools

kallisto|bustools workflow for pre-processing single-cell RNA-seq data

klib

A standalone and lightweight C library

macs

MACS -- Model-based Analysis of ChIP-Seq

max6675-library

Arduino library for interfacing with MAX6675 thermocouple amplifier

node

evented I/O for v8 javascript

particle-ds18x20

DS18B20/DS18S20 library with support for multiple sensors

pbsmake

Make-like wrapper for job scheduling on PBS systems.

piettetech_dht

DHT Sensor Library for Spark Core

probability_cheatsheet

A comprehensive 10-page probability cheatsheet that covers a semester's worth of introduction to probability.

pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

quasar

Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data

rpique.github.io

rpique website

samtools

shiny_popgen

Shiny apps for teaching Population Genetics

sparkmax31855

Adafruit MAX31885 Library ported to Spark Core

sparkmax6675

Adapting Adafruit Arduino MAX6675 for Spark, following SparkMAX31855 as example

starcluster

StarCluster is a utility for creating and managing computing clusters hosted on Amazon's Elastic Compute Cloud (EC2).