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followers: 53.0 following: 28.0 repos: 81.0 gists: 2.0

Name: Roy Francis

Type: User

Company: @NBISweden

Bio: A clean room is a sign of a broken computer.

Hi there 👋

Repositories

R Shiny

Web applications built in R using Shiny.


shiny-rnaseq-power	Run power analyses for RNASeq experiments
shiny-nametagger	Create name tags
shiny-doorsign	Create door signage for office
shiny-planner	A planner calendar
shiny-certificate	Generate course certificates*
shiny-valkompass	Runs PCA and plots your views on Swedish political latent space
pophelperShiny	Visualise admixture proportions

Quarto and Rmarkdown


quarto-team	Quarto extension to add a team layout
quarto-accordion	Quarto extension to add accordions
specky	Quarto website template for courses
quarto-reveal-logo	Quarto extension to add logos to revealjs presentation
abstrave	Quarto website template for courses
folium	Quarto website template for NBIS projects
folium-webpage	Quarto single page template for NBIS projects
minty	Rmarkdown report and xaringan presentation template for NBIS projects
workshop-template-rmd-ga	RMarkdown workshop website template with github actions
raukrtemplate	Rmarkdown report and presentation template used for RaukR workshop 2018-2022

R packages


plummy	ggplot2 custom themes
easyshiny	Generate shiny app from single-cell transcriptomics data
pixture	HTML image gallery with lightbox using htmlwidgets
pophelper	Analyse and visualise admixture proportions
iscrape	Instagram scrapper

Teaching


workshop-scRNAseq	Single cell RNAseq analysis*
workshop-ngsintro	Introduction to Bioinformatics using NGS data*
workshop-rnaseq	Analyses of Bulk RNAseq data*
raukr-2023	RaukR 2023: Advanced R for Bioinformatics*
RaukR-2022	RaukR 2022: Advanced R for Bioinformatics*
RaukR-2021	RaukR 2021: Advanced R for Bioinformatics*
course-r	2 day R course for beginners
RaukR-2019	RaukR 2019: Advanced R for Bioinformatics*
RaukR-2018	RaukR 2018: Advanced R for Bioinformatics*
workshop-r	5 day R course for beginners*

Other


Fontcheck	Interactive font preview
rskb	Knowledgebase for RNASeq and scRNASeq
r-calendar	Photo calendar for print using R
sk	Skandia mortgage interest rates interactive plot
docker-zellkonverter	Docker image to run zellkonverter

*Hosted on organisation account.

Roy Francis's Projects

abstrave

Quarto website template for courses

apptainer

Quick guide to Apptainer / Singularity

auto-gpt

An experimental open-source attempt to make GPT-4 fully autonomous.

cerebro

Visualization of scRNA-seq data.

cerebroapp

R package containing the Cerebro application.

course-r

Course • R for beginners

courses

Course homepages for some of the courses given at SciLifeLab

dataviz-ggplot2

1-Day Workshop on Advanced ggplot2 for posit::conf(2023) by Cédric Scherer

dev_docker

docker-zellkonverter

Convert AnnData to SCE without any dependencies

docsy-jekyll

A Jekyll version of the beautiful Docsy!

drtracker

An R package to track movement of single Zebrafish larvae in 24 or 48 well assay plates.

fancy-index

A responsive Apache index page.

flags

folium

A quarto website template for NBIS project reports.

folium-webpage

fontcheck

fyr

Den sista fyrvaktaren - Sara Wadell

ggplotlive

R Shiny app to develop ggplot2 with live plotting and downloadable code and plot files.

ggshinyapp

Shiny app to build custom ggplot themes

gheme

ggplot2 theme

git-commands

A list of commonly used Git commands

github-to-canvas

A gem for converting and aligning GitHub content to Canvas LMS lessons

grid-gallery

A simple and light Grid Gallery with pure JS

hexwall

R script to neatly align hexagon stickers

homepage_rshiny.nbis.se

homepage for rshiny.nbis.se

hues

Generate palettes of distinct colours through k means clustering of LAB colour space.

ifnb

easyshiny app running ifnb dataset

intro-to-r-with-dge

iscrape

A basic web scrapper for Instagram

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