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Name: Rory Kirchner
Type: User
Bio: neuroscientist, bioinformatician and programmer
Twitter: RoryKirchner
Location: Branford, CT
Name: Rory Kirchner
Type: User
Bio: neuroscientist, bioinformatician and programmer
Twitter: RoryKirchner
Location: Branford, CT
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
R package AssotesteR
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Base functions for bioinformatics and R package development.
conda recipes for bcbio python code and dependencies
Best-practice pipelines for fully automated high throughput sequencing analysis
Unit test data for bcbio-nextgen
Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway analysis for bcbio RNA-seq runs
Toolkit to analyze genomic variation data, built on the GATK with Clojure
Parallel merging, squaring off and ensemble calling for genomic variants
Automated Docker builds for bcbio
Prepares samples and runs RepEnrich2 from a bcbio-nextgen RNA-seq run
Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
Base functions and generics for bcbio R packages.
Quality control and differential expression for bcbio RNA-seq experiments.
Utility functions for analysis of bcbio-nextgen single-cell RNA-seq data.
Training set of manipulated images from open access publications identified by Elisabeth Bik
Conda recipes for the bioconda channel.
Utilities for building and managing bioconda recipes
Bioinformatics library in D. (utils for working with SAM, BAM, SFF formats)
DEPRECATED Lightweight bioinformatics pipeline tools using iPython
BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
Common Data Science set up for Mac πΊπ¬
Does brushing back a batter help a pitcher on subsequent pitches to the outside of the plate?
Chain files for use with liftOver and CrossMap
Chanjo provides a better way to analyze coverage data in clinical sequencing.
Python implementation of the GreyListChIP Bioconductor package
A declarative, efficient, and flexible JavaScript library for building user interfaces.
π Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. πππ
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google β€οΈ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.