Comments (20)
@tpaskhalis Thanks for your answer! As it's not something I would personally be able to help with, I've added the "help wanted" label (we're working on making such issues more easily discoverable cc @steffilazerte), and have posted in rOpenSci slack package-maintenance channel.
from tabulapdf.
@DavidPerea You can install it from GitHub, which should work: remotes::install_github("ropensci/tabulizer")
.
from tabulapdf.
#148 😸
from tabulapdf.
@DavidPerea make sure that you can install and load rJava
before installing tabulizerjars
.
from tabulapdf.
👋 @tpaskhalis, do you need any help?
from tabulapdf.
The release of Java 17 caused some issues in the way R interacts with it through rJava. More specifically from Brian Ripley's email:
On the most common form of failure (all but jsr223, also seen in rJava),
Simon Urbanek writes
"There was a major change in JDK-17 that now disallows reflection to use
non-public access. In short rJava can no longer pretend it is part of a
class when accessing methods/fields which allowed us to call methods
without explicitly subclassing a class. This may have serious
repercussions, because code that could be before written in R now has to
be written in Java, compiled and then called from R."
It's not the best of timing for me, as it all occurred at the beginning of a new teaching semester. And also my Java is not that strong, so it will take me some time to figure this issue. But it's definitely fixable. If anybody wants to take a shot at pull request, I'd be more than happy.
@maelle, thanks, yes, I'd be happy with any help on this issue. But it's certainly on my to-do list, if nobody else attends to it. Seems like it still works with GH installation for some people.
from tabulapdf.
So right now there is no way to use it, right?
As I am a novice user, I don't know a lot about programming to help, but a lot of encouragement!
from tabulapdf.
@DavidPerea You can install it from GitHub, which should work:
remotes::install_github("ropensci/tabulizer")
.
Before installing "tabulizer", I see that I must first have 'tabulizerjars' installed. But I get the following error when using this command: remotes :: install_github ("ropensci / tabulizerjars")
Downloading GitHub repo ropensci/tabulizerjars@HEAD
Running `R CMD build`...
* checking for file 'C:\Users\david\AppData\Local\Temp\Rtmp8ee6dr\remotesf0472d62281\ropensci-tabulizerjars-d1924e0/DESCRIPTION' ... OK
* preparing 'tabulizerjars':
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building 'tabulizerjars_1.0.1.tar.gz'
* installing *source* package 'tabulizerjars' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'tabulizerjars'
finding HTML links ... done
tabulizerjars html
** building package indices
** testing if installed package can be loaded from temporary location
*** arch - i386
*** arch - x64
Error: package or namespace load failed for 'tabulizerjars':
.onLoad failed in loadNamespace() for 'tabulizerjars', details:
call: NULL
error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Error: loading failed
Ejecución interrumpida
ERROR: loading failed for 'x64'
* removing 'C:/Users/david/OneDrive/Documentos/R/win-library/R-4.1.2/library/tabulizerjars'
Warning message:
In i.p(...) :
installation of package ‘C:/Users/david/AppData/Local/Temp/Rtmp8ee6dr/filef042d3e148b/tabulizerjars_1.0.1.tar.gz’ had non-zero exit status
How is it solved?
from tabulapdf.
@DavidPerea make sure that you can install and load
rJava
before installingtabulizerjars
.
Solved, thank you very much!
from tabulapdf.
Hi, I'm in same boat. Would like to use this package, but the remotes :: install_github ("ropensci / tabulizerjars") fails like this:
remotes::install_github("ropensci/tabulizer")
Downloading GitHub repo ropensci/tabulizer@HEAD
Skipping 1 packages not available: tabulizerjars
✓ checking for file ‘/private/var/folders/55/2g40bwx56rvg3bnchwhvqkdr0000gn/T/Rtmp3jLMsJ/remotes6afbece498f/ropensci-tabulizer-9f45f91/DESCRIPTION’ ...
─ preparing ‘tabulizer’:
✓ checking DESCRIPTION meta-information
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
Removed empty directory ‘tabulizer/docs’
─ building ‘tabulizer_0.2.2.tar.gz’
ERROR: dependency ‘tabulizerjars’ is not available for package ‘tabulizer’
- removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/tabulizer’
Warning message:
In i.p(...) :
installation of package ‘/var/folders/55/2g40bwx56rvg3bnchwhvqkdr0000gn/T//Rtmp3jLMsJ/file6afb93f52e1/tabulizer_0.2.2.tar.gz’ had non-zero exit status
rJava is installed and loaded - and I don't get any obvious errors from it.
This is a Mac. Happy to move to a PC/Ubuntu if that is an easier path.
Any clues? Really, really could use this package right now!
thanks,
from tabulapdf.
I got this working. It was simple.
You need this:
remotes::install_github(c("ropensci/tabulizerjars", "ropensci/tabulizer")
from tabulapdf.
For macOS >= to Catalina, it won’t work b/c the relevant legacy Java runtime (SE 6) is not compatible, downgrade OS, switch OS systems or find an alternative application.
from tabulapdf.
Hi!
@DavidPerea You can install it from GitHub, which should work:
remotes::install_github("ropensci/tabulizer")
.
I tried this but I had this error
Downloading GitHub repo ropensci/tabulizer@HEAD Error: Failed to install 'tabulizer' from GitHub: invalid octal digit
Help, please! i need tu use this package
from tabulapdf.
@araceliramirezg This seems to be a separate issue of your local R installation. I suggest to open a new issue and provide more information on your local R installation. You might use the reprex package to provide this information.
from tabulapdf.
@araceliramirezg This seems to be a separate issue of your local R installation. I suggest to open a new issue and provide more information on your local R installation. You might use the reprex package to provide this information.
@pat-s I tried it again and i have this message:
`remotes::install_github("ropensci/tabulizer")
Downloading GitHub repo ropensci/tabulizer@HEAD
Downloading GitHub repo ropensci/tabulizerjars@HEAD
WARNING: Rtools is required to build R packages, but is not currently installed.
Please download and install Rtools 4.0 from https://cran.r-project.org/bin/windows/Rtools/.
√ checking for file 'C:\Users\pc\AppData\Local\Temp\RtmpY7EkSu\remotes9e414fe2c0a\ropensci-tabulizerjars-d1924e0/DESCRIPTION' (773ms)
- preparing 'tabulizerjars':
√ checking DESCRIPTION meta-information ... - checking for LF line-endings in source and make files and shell scripts
- checking for empty or unneeded directories
- building 'tabulizerjars_1.0.1.tar.gz'
Installing package into ‘C:/Users/pc/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)
- installing source package 'tabulizerjars' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'tabulizerjars'
finding HTML links ... done
tabulizerjars html
** building package indices
** testing if installed package can be loaded from temporary location
*** arch - i386
*** arch - x64
Error: package or namespace load failed for 'tabulizerjars':
.onLoad failed in loadNamespace() for 'tabulizerjars', details:
call: NULL
error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: No CurrentVersion entry in Software/JavaSoft registry! Try re-installing Java and make sure R and Java have matching architectures.
Error: loading failed
Ejecución interrumpida
ERROR: loading failed for 'x64' - removing 'C:/Users/pc/Documents/R/win-library/4.0/tabulizerjars'
Downloading GitHub repo ropensci/tabulizerjars@HEAD
Skipping tabulizerjars, it is already being installed
WARNING: Rtools is required to build R packages, but is not currently installed.
Please download and install Rtools 4.0 from https://cran.r-project.org/bin/windows/Rtools/.
√ checking for file 'C:\Users\pc\AppData\Local\Temp\RtmpY7EkSu\remotes9e46a0f279d\ropensci-tabulizer-3049a79/DESCRIPTION' (822ms)
- preparing 'tabulizer': (391ms)
√ checking DESCRIPTION meta-information ... - checking for LF line-endings in source and make files and shell scripts
- checking for empty or unneeded directories
Removed empty directory 'tabulizer/docs' - building 'tabulizer_0.2.2.tar.gz'
Installing package into ‘C:/Users/pc/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)
ERROR: dependency 'tabulizerjars' is not available for package 'tabulizer'
- removing 'C:/Users/pc/Documents/R/win-library/4.0/tabulizer'
Warning messages:
1: In i.p(...) :
installation of package ‘C:/Users/pc/AppData/Local/Temp/RtmpY7EkSu/file9e42a277c7b/tabulizerjars_1.0.1.tar.gz’ had non-zero exit status
2: In i.p(...) :
installation of package ‘C:/Users/pc/AppData/Local/Temp/RtmpY7EkSu/file9e4616d358b/tabulizer_0.2.2.tar.gz’ had non-zero exit status`
Help:(
from tabulapdf.
The problem with Java 17 seems to come from the use of the $
operator that uses reflection. It seems that the issue can be solved with some minor changes in the code (PR #146).
from tabulapdf.
Any update on accepting @AQLT pull request?
from tabulapdf.
👋 @tpaskhalis, is any help needed? I also emailed you but imagine you're busy!
from tabulapdf.
Maybe @leeper has time to help here and eventually merge #146?
Otherwise summoning the swiss-knife @jeroen as he did the last commit in the history.
from tabulapdf.
re-added https://cran.r-project.org/package=tabulapdf
from tabulapdf.
Related Issues (20)
- Select multiple areas per page in `*_areas()`
- q question about package( Tabulizer) installation HOT 4
- a suggested code or documentation change, improvement to the code, or feature request HOT 1
- inconsistent behavior of extract_tables and extract_areas HOT 4
- Error in .jcall("RJavaTools", "Ljava/lang/Object;", "invokeMethod", cl, : java.lang.IllegalAccessException: class RJavaTools cannot access a member of class java.util.ArrayList$Itr (in module java.base) with modifiers "public" HOT 11
- New Maintainer Wanted :-) HOT 6
- An illegal reflective access operation has occurred HOT 1
- Renaming to tabula HOT 2
- Windows CI fails because of Java 8 requirement HOT 1
- build fails with tabula 1.2.1 jar HOT 1
- ROADMAP FOR FALL 2023 HOT 6
- Unable to install in tabulizer HOT 1
- pkgdown building issue HOT 10
- Is jdk7 -y needed? HOT 6
- Is the package abandoned? HOT 1
- Issue with extract_tables function. Couldn't run the example: getRowCount HOT 4
- Broken link to package documentation, and missing vignette HOT 3
- easier way to install Java for your users with rJavaEnv HOT 3
- How can I get information from checkboxes in tables? HOT 3
- Fatal R error when attempting to extract text from a PDF that includes a particular mathematical symbol HOT 6
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from tabulapdf.