romain-lopez Goto Github PK

academic-kickstart

📝 Easily create a beautiful website using Academic, Hugo, and Netlify

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bioconda-recipes

Conda recipes for the bioconda channel.

cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

codeshare

some random code

crypto-not-currency

dcdi

Repository for "Differentiable Causal Discovery from Interventional Data"

destvi-reproducibility

Reproducing the experiments of the DestVI paper

edward

A library for probabilistic modeling, inference, and criticism. Deep generative models, variational inference. Runs on TensorFlow.

hcv

Information Constraints on Auto-Encoding Variational Bayes

phd-dissertation

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

rebuttal-neurips

romain-lopez.github.io

website

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scvi

Deep generative modeling for single-cell omics data

scvi-reproducibility

Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"

singlecellopenproblems

Formalizing and benchmarking open problems in single-cell genomics

stereoscope

Spatial mapping of cell types by integration of transcriptomics data

vision

Signature Analysis and Visualization for Single-Cell RNA-seq

yoseflab.github.io