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Rachael Kretsch's Projects

arnie icon arnie

Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.

bwc icon bwc

Analysis of papers submitted to the BWC during the review process

eman2 icon eman2

A scientific image processing software suite with a focus on CryoEM and CryoET

mapq icon mapq

MapQ is a plugin for UCSF Chimera to calculate Q-scores of an atomic model in a cryoEM map.

netgraph icon netgraph

Drawing utilities for publication quality plots of networks

nxviz icon nxviz

Visualization Package for NetworkX

pdb2pqr icon pdb2pqr

PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.

ribodraw icon ribodraw

Semiautomated layout of RNA tertiary structure diagrams

ribographviz icon ribographviz

Visualize global properties of large RNAs using GraphViz force-directed layout.

rrt icon rrt

Final Project for Radicals, Revolutionaries and Terrorists

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