richiemort79 Goto Github PK
Name: Richard Mort
Type: User
Bio: Lecturer in Biomedicine, Lancaster University
Richard Mort's Projects
autofocus_hyperstack
Selects the in focus slice in each frame of an ImageJ hyperstack and creates a new stack.
cell_patterning
ImageJ toolset for the anlysis of cell patterning
clonal_tools
ClonalTools are a set of macros designed for the analysis of mosaic patterns.
diffusion_analysis
Performs a basic diffusion analysis on ImageJ tracking data
ensemble_diffusion_analysis
Performs a diffusion analysis using the time ensemble average method described in Charsooghi, MA et al 2011.
fucci_tools
An ImageJ toolset for the analysis of Fucci biosensors in timelapse sequences
linux-vm-setup
A simple bash script to set up a the environment on a virtual linux install so that it can be used for image anlysis with Fiji/ImageJ.
mitosis_tools
A set of tools to track cells through a mitosis and analyse their trajectories
plot_zeroed_tracks
Example macro plotiing ImageJ tracking data with a x/y 0 origin.
simi_reader
Simple tool to read Simi.sbd files created by Simi Biocell and analyze and plot the lineage tree in ImageJ
stats_from_results
Example macro calculating stats from an ImageJ results table column.
tiled_autofocus
For correcting slant in confocal z stacks
unet-gan-matting
Background Removal based on U-Net
well_detection
Tool to detect and analyse wells in PDMS microarrays
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