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100daysofcode-with-python-course

Course materials and handouts for #100DaysOfCode in Python course

cadm_project

Code for Computer Aided Discovery Methods class project

challenges

PyBites Code Challenges

decon

edec

EDec (Epigenomic Deconvolution) is a technique that, starting from methylation and gene expression profiles of bulk tissue samples, infers cell type composition of each input sample as well as DNA methylation and gene transcription profiles of constituent cell types.

helloworld

First GitHub repository

mnp_training

DNA methylation-based classification of central nervous system tumours

oncoprintr

raukr2018

reconcnv

visualize CNV data from targeted capture based sequencing data

spoon-knife

This repo is for demonstration purposes only.

tidy-tuesday-14

R4DS Tidy Tuesday - Week 14

tidy_tuesday

viscap

VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data. For algorithmic details, see Pugh TJ et al. Genet Med. 2016 Jul;18(7):712-9.